Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SPDYE13P-201ENST00000445314 798 ntBASIC19■□□□□ 0.63
CACNA1AO00555 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19■□□□□ 0.63
CACNA1AO00555 AL390719.2-201ENST00000606993 987 ntBASIC19■□□□□ 0.63
CACNA1AO00555 AP000692.2-201ENST00000608391 879 ntBASIC19■□□□□ 0.63
CACNA1AO00555 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19■□□□□ 0.63
CACNA1AO00555 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19■□□□□ 0.63
CACNA1AO00555 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19■□□□□ 0.63
CACNA1AO00555 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CACNA1AO00555 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CACNA1AO00555 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19■□□□□ 0.63
CACNA1AO00555 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CACNA1AO00555 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19■□□□□ 0.63
CACNA1AO00555 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CACNA1AO00555 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CACNA1AO00555 KRT18P58-201ENST00000527480 1120 ntBASIC18.99■□□□□ 0.63
CACNA1AO00555 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.99■□□□□ 0.63
CACNA1AO00555 AC140113.2-201ENST00000604370 208 ntBASIC18.99■□□□□ 0.63
CACNA1AO00555 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CACNA1AO00555 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.99■□□□□ 0.63
CACNA1AO00555 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CACNA1AO00555 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CACNA1AO00555 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CACNA1AO00555 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CACNA1AO00555 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.99■□□□□ 0.63
CACNA1AO00555 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CACNA1AO00555 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CACNA1AO00555 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CACNA1AO00555 TSPY19P-201ENST00000418461 509 ntBASIC18.98■□□□□ 0.63
CACNA1AO00555 BX842568.4-201ENST00000421222 227 ntBASIC18.98■□□□□ 0.63
CACNA1AO00555 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.98■□□□□ 0.63
CACNA1AO00555 TSPY18P-201ENST00000441642 509 ntBASIC18.98■□□□□ 0.63
CACNA1AO00555 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.98■□□□□ 0.63
CACNA1AO00555 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.98■□□□□ 0.63
CACNA1AO00555 AC092329.2-201ENST00000598402 547 ntBASIC18.98■□□□□ 0.63
CACNA1AO00555 RCC2P6-201ENST00000526625 1557 ntBASIC18.98■□□□□ 0.63
CACNA1AO00555 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CACNA1AO00555 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CACNA1AO00555 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CACNA1AO00555 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.98■□□□□ 0.63
CACNA1AO00555 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.98■□□□□ 0.63
CACNA1AO00555 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CACNA1AO00555 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CACNA1AO00555 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.98■□□□□ 0.63
CACNA1AO00555 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.98■□□□□ 0.63
CACNA1AO00555 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CACNA1AO00555 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
CACNA1AO00555 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CACNA1AO00555 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CACNA1AO00555 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CACNA1AO00555 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.97■□□□□ 0.63
CACNA1AO00555 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CACNA1AO00555 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.97■□□□□ 0.63
CACNA1AO00555 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.97■□□□□ 0.63
CACNA1AO00555 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.97■□□□□ 0.63
CACNA1AO00555 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CACNA1AO00555 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.97■□□□□ 0.63
CACNA1AO00555 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CACNA1AO00555 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CACNA1AO00555 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CACNA1AO00555 TSPY17P-201ENST00000450329 467 ntBASIC18.97■□□□□ 0.63
CACNA1AO00555 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.97■□□□□ 0.63
CACNA1AO00555 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.97■□□□□ 0.63
CACNA1AO00555 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CACNA1AO00555 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CACNA1AO00555 SLC25A1P1-201ENST00000528351 927 ntBASIC18.96■□□□□ 0.63
CACNA1AO00555 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.96■□□□□ 0.63
CACNA1AO00555 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CACNA1AO00555 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.96■□□□□ 0.63
CACNA1AO00555 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.96■□□□□ 0.63
CACNA1AO00555 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.96■□□□□ 0.63
CACNA1AO00555 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.96■□□□□ 0.63
CACNA1AO00555 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CACNA1AO00555 AP002383.4-201ENST00000442518 975 ntBASIC18.96■□□□□ 0.63
CACNA1AO00555 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.96■□□□□ 0.63
CACNA1AO00555 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms