Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC007679.2-201ENST00000422116 781 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 ELOBP4-201ENST00000423418 296 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 RNF11P2-201ENST00000427702 440 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC245047.1-201ENST00000433276 873 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 RPS21P1-201ENST00000434479 247 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 RBMY3AP-201ENST00000449381 1145 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 PCMTD1P3-201ENST00000451824 472 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 LINC02530-201ENST00000457945 894 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC078788.2-201ENST00000462300 382 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 PDPN-205ENST00000487038 607 ntTSL 2 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC117422.1-201ENST00000508263 379 ntTSL 3 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC008676.1-202ENST00000520658 545 ntTSL 4 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 PSMC1P8-201ENST00000536820 1296 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 PTCSC3-201ENST00000556013 571 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AL121820.1-201ENST00000556919 461 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 MIR5705-201ENST00000579870 89 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 ZNF528-AS1-204ENST00000601562 1069 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC074198.1-201ENST00000506546 1397 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 OLMALINC-203ENST00000641087 3779 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 MED6-212ENST00000615788 1700 ntTSL 5 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC091544.5-201ENST00000620192 3815 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 RAD17P2-201ENST00000451754 1977 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 R3HCC1L-206ENST00000613938 1397 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 TTC39B-206ENST00000507285 2243 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 PAGE4-201ENST00000218068 499 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC093642.1-201ENST00000412193 565 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC008753.1-201ENST00000423096 284 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AL591846.2-201ENST00000425161 358 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 LINC00160-201ENST00000430635 693 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 SLC25A24P1-202ENST00000434803 1220 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC108039.2-201ENST00000440214 359 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 LIN28AP2-201ENST00000445283 458 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC012493.1-201ENST00000453252 760 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC016489.1-201ENST00000461109 375 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC027801.3-201ENST00000515049 698 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 RPL10P18-201ENST00000519384 309 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 OR6M3P-201ENST00000531567 700 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 DCN-207ENST00000546370 586 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 BMS1P16-201ENST00000556075 1147 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 HNRNPA1P71-201ENST00000559135 950 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC092368.2-201ENST00000565911 600 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC137695.1-201ENST00000604126 489 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC103724.4-201ENST00000605981 292 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC012511.1-201ENST00000608140 449 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 CT45A8-202ENST00000611660 1008 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 CT45A10-201ENST00000611668 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 CT45A2-202ENST00000612907 1008 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC023310.4-201ENST00000613130 650 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 PSMD10P2-202ENST00000626135 819 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 CCNT1-206ENST00000640148 596 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 CCNC-204ENST00000482541 1704 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 AC007938.1-201ENST00000562524 2902 ntBASIC6.24□□□□□ -1.41
NKX3-1Q99801 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
NKX3-1Q99801 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms