Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.3□□□□□ -1.4
NKX3-1Q99801 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC092821.2-201ENST00000545710 2042 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 AL591848.4-201ENST00000567832 3472 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 AC087045.3-201ENST00000623046 2468 ntBASIC6.3□□□□□ -1.4
NKX3-1Q99801 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX3-1Q99801 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC010329.1-201ENST00000593903 8328 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC090771.1-201ENST00000585803 1618 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 MROH3P-201ENST00000435735 2676 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AL390760.1-201ENST00000366188 410 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 PTMAP8-201ENST00000397729 342 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 RBBP4P4-201ENST00000398588 1289 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 GRXCR1-201ENST00000399770 991 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 RN7SKP232-201ENST00000410170 290 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 NFU1P1-201ENST00000413128 774 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 MIR4435-2HG-205ENST00000431385 843 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC002486.2-201ENST00000447806 590 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 LINC02556-201ENST00000450776 346 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AL390728.3-201ENST00000452704 270 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC009955.1-201ENST00000455896 271 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 RN7SL834P-201ENST00000461450 286 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC040975.1-201ENST00000472104 316 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 GABRR3-202ENST00000472788 1416 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 RPS14P7-201ENST00000473701 448 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 RN7SL445P-201ENST00000495609 293 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 PLSCR2-205ENST00000497985 1441 ntTSL 2 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 LINC01184-206ENST00000508878 968 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 LINC02413-202ENST00000552353 898 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC027020.1-202ENST00000557839 429 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 BMS1P8-201ENST00000565049 1178 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 ZNF174-205ENST00000575752 1068 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC064805.1-203ENST00000577560 526 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 RN7SL786P-201ENST00000579130 298 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC036222.1-201ENST00000579972 701 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC011509.2-201ENST00000592263 627 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC137695.2-201ENST00000603123 754 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC016394.1-201ENST00000608444 833 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AP005329.3-201ENST00000609924 686 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AL121809.2-201ENST00000613169 341 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 MIR6726-201ENST00000613751 61 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC009950.2-201ENST00000636548 183 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 TRIM51FP-201ENST00000526452 1353 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 MAPK10-270ENST00000641102 3538 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AC005839.1-201ENST00000624148 3213 ntBASIC6.29□□□□□ -1.4
NKX3-1Q99801 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NKX3-1Q99801 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
NKX3-1Q99801 LPAL2-203ENST00000454031 2498 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 SLC9A9-201ENST00000316549 3627 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms