Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MAPK10-202ENST00000359221 2668 ntTSL 5 BASIC8.06□□□□□ -1.12
MSX1P28360 CYB5B-202ENST00000512062 4358 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSX1P28360 C3P1-202ENST00000497718 4954 ntBASIC8.05□□□□□ -1.12
MSX1P28360 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 MFSD1P1-201ENST00000576210 1327 ntBASIC8.05□□□□□ -1.12
MSX1P28360 CCDC144B-201ENST00000285176 4310 ntBASIC8.05□□□□□ -1.12
MSX1P28360 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 HRH2-204ENST00000636584 4067 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 KLRB1-201ENST00000229402 1448 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 ZNF826P-204ENST00000597334 1446 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 TMEM167A-201ENST00000502346 4630 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 LINC00608-202ENST00000432733 2818 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 LTBP1-201ENST00000402934 4948 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 MAGEE2-201ENST00000373359 2249 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
MSX1P28360 NGDN-201ENST00000397154 2204 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 SERPINB6-202ENST00000380520 3265 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 AC013268.3-201ENST00000262716 2324 ntBASIC8.05□□□□□ -1.12
MSX1P28360 LINC01133-203ENST00000635112 1996 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 APOM-202ENST00000375918 922 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 RNU6-116P-201ENST00000384042 109 ntBASIC8.05□□□□□ -1.12
MSX1P28360 Y_RNA.465-201ENST00000384293 102 ntBASIC8.05□□□□□ -1.12
MSX1P28360 HPN-AS1-201ENST00000392227 1124 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 CES5AP1-201ENST00000400418 859 ntBASIC8.05□□□□□ -1.12
MSX1P28360 ARL4AP5-201ENST00000404372 599 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC064862.3-201ENST00000411435 571 ntBASIC8.05□□□□□ -1.12
MSX1P28360 NPM1P4-201ENST00000414095 812 ntBASIC8.05□□□□□ -1.12
MSX1P28360 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 ATG4AP1-201ENST00000416893 538 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 RAC1P8-201ENST00000427086 527 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC010975.2-201ENST00000427781 588 ntBASIC8.05□□□□□ -1.12
MSX1P28360 EMC3-AS1-204ENST00000430621 683 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 LINC02037-201ENST00000455821 1195 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 RPL7P1-201ENST00000468161 747 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC110994.1-201ENST00000468519 406 ntBASIC8.05□□□□□ -1.12
MSX1P28360 RPL7P9-201ENST00000468715 747 ntBASIC8.05□□□□□ -1.12
MSX1P28360 RN7SL401P-201ENST00000470065 298 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC112719.1-201ENST00000477971 315 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC008481.2-201ENST00000483614 531 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC025465.1-201ENST00000503145 797 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 RACK1-211ENST00000504726 388 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 CFL1P5-201ENST00000508046 502 ntBASIC8.05□□□□□ -1.12
MSX1P28360 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 TBCA-206ENST00000518338 551 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 AC022880.2-201ENST00000532664 270 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AP002383.5-201ENST00000542623 1161 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 CRADD-210ENST00000552033 622 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 AL117190.2-201ENST00000554041 289 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 AF067845.1-201ENST00000567210 1192 ntBASIC8.05□□□□□ -1.12
MSX1P28360 HLA-P-207ENST00000568192 747 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC090079.1-201ENST00000572092 1183 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 ZNF677-208ENST00000599012 796 ntTSL 3 BASIC8.05□□□□□ -1.12
MSX1P28360 STX8P1-201ENST00000603161 355 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AL645933.2-201ENST00000606743 1207 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AL031281.2-201ENST00000606754 748 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC064836.2-201ENST00000609491 462 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AL133520.1-201ENST00000610430 700 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC107075.1-201ENST00000613695 314 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC002401.3-201ENST00000620020 440 ntBASIC8.05□□□□□ -1.12
MSX1P28360 AC073107.2-201ENST00000620476 238 ntBASIC8.05□□□□□ -1.12
MSX1P28360 CT45A9-202ENST00000620704 1010 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 LINC02028-221ENST00000622169 621 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 TMEM182-211ENST00000640575 1155 ntTSL 5 BASIC8.05□□□□□ -1.12
MSX1P28360 OR5AU1-204ENST00000641822 1197 ntBASIC8.05□□□□□ -1.12
MSX1P28360 CTAGE5-205ENST00000348007 2762 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 ZNF507-201ENST00000311921 7638 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 LINC02292-201ENST00000554522 1701 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 EIF4BP6-201ENST00000431936 1828 ntBASIC8.05□□□□□ -1.12
MSX1P28360 WDR76-201ENST00000263795 3978 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 OR1S1-202ENST00000641544 1474 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
MSX1P28360 CALCR-205ENST00000421592 3626 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 AC128688.2-201ENST00000563632 1937 ntBASIC8.05□□□□□ -1.12
MSX1P28360 PRSS54-202ENST00000543437 1555 ntTSL 2 BASIC8.05□□□□□ -1.12
MSX1P28360 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 DPY19L1P1-201ENST00000417811 2594 ntBASIC8.05□□□□□ -1.12
MSX1P28360 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 NLRP4-201ENST00000301295 3670 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 PDZK1-202ENST00000417171 2230 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 USP32P1-201ENST00000341745 3233 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 HERC3-201ENST00000264345 4764 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSX1P28360 CCAT2-201ENST00000630920 1752 ntBASIC8.05□□□□□ -1.12
MSX1P28360 ITIH4-201ENST00000266041 3336 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSX1P28360 KLHL32-205ENST00000539200 3600 ntTSL 2 BASIC8.04□□□□□ -1.12
MSX1P28360 THBS4-204ENST00000511733 3094 ntAPPRIS ALT2 TSL 2 BASIC8.04□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms