Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 LINC01482-201ENST00000585484 2616 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 MARK2P10-201ENST00000454959 1437 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 TATDN2P3-201ENST00000452855 3665 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 RNA5SP448-201ENST00000363151 111 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 NXT2-204ENST00000372107 937 ntTSL 3 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 MIR106B-201ENST00000385301 82 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AL353151.1-201ENST00000402406 604 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC243547.1-201ENST00000415065 408 ntTSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC017104.2-201ENST00000417000 321 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 AL138828.1-207ENST00000417643 734 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 SNX18P14-201ENST00000429308 574 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 LINC00460-203ENST00000444865 739 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 RPL6P24-201ENST00000445338 864 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 ANAPC10-202ENST00000451299 928 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 FAM74A1-201ENST00000465257 623 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 RPL7P17-201ENST00000470927 724 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 RN7SL124P-201ENST00000498656 285 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC114300.1-201ENST00000502347 280 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC055733.3-201ENST00000505214 523 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 OR4A1P-201ENST00000532342 920 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AL355076.3-201ENST00000555838 587 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 ARL6IP1-204ENST00000562819 578 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC092720.1-203ENST00000563921 550 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC006120.1-201ENST00000579375 546 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 SLFN5-203ENST00000592325 1225 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC073389.2-201ENST00000606726 571 ntTSL 4 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC016252.1-201ENST00000609721 474 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC007224.2-201ENST00000625011 510 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 GAS2-210ENST00000630668 674 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC183089.2-201ENST00000637931 916 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 GTPBP10-202ENST00000257659 1740 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 TMEM75-201ENST00000624314 2165 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 NCOA4P3-201ENST00000513203 1877 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 EPS15P1-202ENST00000459691 2071 ntBASIC6.32□□□□□ -1.4
NKX3-1Q99801 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC6.32□□□□□ -1.4
NKX3-1Q99801 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX3-1Q99801 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 FAM122C-202ENST00000370785 1344 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AL133464.1-201ENST00000635130 1705 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC068389.3-201ENST00000373384 529 ntTSL 4 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 CFAP61-203ENST00000377293 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX3-1Q99801 AC092952.1-201ENST00000397646 1209 ntBASIC6.31□□□□□ -1.4
NKX3-1Q99801 CNPY1-202ENST00000406197 560 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX3-1Q99801 SNORA2C-201ENST00000408564 137 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms