Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 BX119917.1-201ENST00000432517 502 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 LINC00578-201ENST00000439009 542 ntTSL 4 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC093157.1-202ENST00000446527 1045 ntTSL 3 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 CDC42P2-201ENST00000448566 569 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 RN7SL55P-201ENST00000464534 297 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 CREM-224ENST00000468236 582 ntTSL 3 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 RN7SL414P-201ENST00000469545 294 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 RN7SL88P-201ENST00000480166 299 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 CREM-234ENST00000484283 660 ntTSL 5 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC008496.1-201ENST00000509131 295 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 LINC02443-201ENST00000536518 585 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 WASF2-201ENST00000536657 1083 ntTSL 2 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 PRR13-203ENST00000546581 810 ntAPPRIS ALT2 TSL 3 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC091132.5-205ENST00000585761 560 ntTSL 4 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 AC005070.1-201ENST00000603744 365 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 LINC02532-210ENST00000606430 584 ntTSL 4 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 Metazoa_SRP.99-201ENST00000621370 254 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 SNORA43.5-201ENST00000631270 138 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 CASC19-212ENST00000641153 1287 ntBASIC6.34□□□□□ -1.39
NKX3-1Q99801 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 ARNTL2-203ENST00000311001 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
NKX3-1Q99801 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
NKX3-1Q99801 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
NKX3-1Q99801 LMO3-212ENST00000535535 1488 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.4
NKX3-1Q99801 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
NKX3-1Q99801 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
NKX3-1Q99801 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
NKX3-1Q99801 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR52K3P-202ENST00000641797 1729 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 LIPF-202ENST00000355843 1357 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AL137918.1-201ENST00000624542 1922 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC079178.2-201ENST00000439323 1624 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 CRYZ-201ENST00000340866 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AMELY-201ENST00000215479 802 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 ANKS1B-201ENST00000329257 996 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR2T10-201ENST00000330500 1049 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AL024497.1-201ENST00000412954 631 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR10U1P-201ENST00000414690 905 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 EEF1A1P34-201ENST00000419888 1267 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC006017.1-201ENST00000424630 673 ntTSL 3 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 PYHIN5P-201ENST00000431627 723 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 FDPSP8-201ENST00000438304 1089 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 FO393419.1-201ENST00000443746 355 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 TRMT2B-AS1-201ENST00000443801 205 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 RBMY2BP-202ENST00000451071 1156 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 ZNF32-AS1-201ENST00000453284 434 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AGKP1-201ENST00000455254 1263 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AL592464.2-201ENST00000457440 607 ntTSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 RPS2P25-201ENST00000467247 580 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC009153.1-201ENST00000485799 496 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC006387.1-203ENST00000494849 342 ntTSL 3 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 CC2D2A-207ENST00000507954 548 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC114801.1-201ENST00000512633 297 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 ADI1P2-201ENST00000514945 429 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR7E96P-201ENST00000530816 976 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR7E1P-201ENST00000533891 958 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 MYL6-211ENST00000548580 528 ntTSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 NUTF2P2-201ENST00000551207 384 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC004817.1-201ENST00000553621 721 ntTSL 4 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 TGFB3-AS1-201ENST00000553732 580 ntTSL 4 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 ACYP1-204ENST00000555135 639 ntTSL 3 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 MT1B-202ENST00000562399 351 ntTSL 3 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AL023284.3-202ENST00000571188 543 ntTSL 5 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC011487.2-201ENST00000600193 1228 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
NKX3-1Q99801 AL592504.1-201ENST00000605319 439 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AL136985.2-201ENST00000607372 535 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 OR6L2P-201ENST00000608207 925 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC080112.3-201ENST00000612552 880 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 MIR6736-201ENST00000616799 59 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 MIR6761-201ENST00000617899 72 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 RN7SL680P-201ENST00000620379 299 ntBASIC6.33□□□□□ -1.4
NKX3-1Q99801 AC130448.2-201ENST00000624082 374 ntBASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms