Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
CHMP4CQ96CF2 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
CHMP4CQ96CF2 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 VEZF1P1-201ENST00000423931 1541 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 RN7SKP236-201ENST00000410635 284 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AL445193.2-201ENST00000419596 620 ntTSL 3 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AC093107.1-201ENST00000422772 609 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 NPM1P30-201ENST00000425092 828 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 CENPN-204ENST00000428963 971 ntTSL 2 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 RPL5P4-201ENST00000434805 886 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 RHEBP1-201ENST00000448647 556 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AL591379.2-201ENST00000450223 397 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 MRPS21P1-201ENST00000453850 223 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 LDHAP1-201ENST00000509421 992 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 LINC01288-201ENST00000519189 529 ntTSL 4 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 MIAT_exon1.1-201ENST00000617016 135 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 DLST-216ENST00000626051 252 ntTSL 5 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 METTL15-210ENST00000634721 1182 ntTSL 5 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 GTF2IP1-202ENST00000614592 2047 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 AL136981.1-203ENST00000451452 3844 ntBASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
CHMP4CQ96CF2 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 SAMMSON-203ENST00000641005 2168 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 PPIAP22-201ENST00000358455 498 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 RNA5SP79-201ENST00000365193 109 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 RNU1-122P-201ENST00000365538 156 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 TOMM7-202ENST00000372879 514 ntTSL 4 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AL355862.1-201ENST00000412705 353 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC243547.1-201ENST00000415065 408 ntTSL 2 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 RFESDP1-201ENST00000422350 461 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 GAPDHP73-201ENST00000423411 1007 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC009495.3-201ENST00000425688 779 ntTSL 3 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC098483.1-201ENST00000438623 955 ntTSL 5 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 NQO1-204ENST00000439109 924 ntTSL 2 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC013429.1-201ENST00000456604 422 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 RPL34P22-201ENST00000468193 318 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 NPY6R-201ENST00000503807 1112 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 OR7E87P-201ENST00000532397 929 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 ATP5J2P4-201ENST00000538774 267 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC036222.1-201ENST00000579972 701 ntTSL 3 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC009950.1-209ENST00000595586 777 ntTSL 5 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AL031429.2-201ENST00000602605 649 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC116165.3-201ENST00000614524 400 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC119674.1-209ENST00000642031 997 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 Z99129.4-201ENST00000624649 2435 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 AC061975.7-201ENST00000592016 2692 ntBASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
CHMP4CQ96CF2 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms