Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC069528.1-202ENST00000482888 637 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC114940.1-201ENST00000512162 1265 ntBASIC8.11□□□□□ -1.11
MSX1P28360 LINC01438-201ENST00000512794 556 ntTSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 AC136604.3-202ENST00000514793 485 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 MTCYBP19-201ENST00000517463 1124 ntBASIC8.11□□□□□ -1.11
MSX1P28360 NPM1P6-201ENST00000521088 871 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC022217.3-201ENST00000523005 352 ntTSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 LINC01499-202ENST00000529282 563 ntTSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 LINC01499-203ENST00000530379 555 ntTSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 AC037479.1-201ENST00000558361 625 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC109630.1-201ENST00000558846 730 ntTSL 3 BASIC8.11□□□□□ -1.11
MSX1P28360 AL049634.2-203ENST00000564763 588 ntAPPRIS ALT2 TSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 AC018521.4-201ENST00000578239 531 ntTSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 AC127024.5-201ENST00000580085 462 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC233702.4-201ENST00000581610 304 ntBASIC8.11□□□□□ -1.11
MSX1P28360 RN7SL622P-201ENST00000585292 275 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC087289.3-203ENST00000587556 550 ntAPPRIS P5 TSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 MKNK2-211ENST00000591142 875 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 U73023.1-201ENST00000603134 700 ntBASIC8.11□□□□□ -1.11
MSX1P28360 NDUFA8P1-201ENST00000605525 367 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AC006270.3-201ENST00000605967 1036 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AL513479.1-201ENST00000611376 585 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AL080285.2-201ENST00000612765 458 ntBASIC8.11□□□□□ -1.11
MSX1P28360 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC8.11□□□□□ -1.11
MSX1P28360 AC245505.3-201ENST00000616788 358 ntBASIC8.11□□□□□ -1.11
MSX1P28360 BSNDP3-201ENST00000617487 364 ntBASIC8.11□□□□□ -1.11
MSX1P28360 ST13-207ENST00000620312 944 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 AC087645.3-201ENST00000624708 587 ntBASIC8.11□□□□□ -1.11
MSX1P28360 OLMALINC-206ENST00000641799 1195 ntBASIC8.11□□□□□ -1.11
MSX1P28360 ANKRD20A10P-201ENST00000457591 1515 ntBASIC8.11□□□□□ -1.11
MSX1P28360 FBXW7-207ENST00000603841 2261 ntAPPRIS P4 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 FNDC3A-204ENST00000492622 6286 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 SPARC-201ENST00000231061 3701 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 SNX19P2-201ENST00000452841 2971 ntBASIC8.11□□□□□ -1.11
MSX1P28360 ZNF80-203ENST00000619534 2216 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 DLD-205ENST00000440410 1993 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 GOSR2-215ENST00000638374 2683 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
MSX1P28360 TRIM49D1-202ENST00000530311 2164 ntAPPRIS P2 TSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 LRMP-205ENST00000548766 2193 ntAPPRIS P2 TSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 AP003025.2-202ENST00000414466 4335 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 EMC1-202ENST00000375208 4084 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 OR3A1-201ENST00000323404 1650 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
MSX1P28360 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 AC099753.1-201ENST00000634947 2118 ntTSL 5 BASIC8.11□□□□□ -1.11
MSX1P28360 AL353583.1-201ENST00000624195 1855 ntBASIC8.11□□□□□ -1.11
MSX1P28360 KLHL1-202ENST00000545028 3966 ntTSL 2 BASIC8.11□□□□□ -1.11
MSX1P28360 OR8G1-202ENST00000641972 5055 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
MSX1P28360 AC093616.1-201ENST00000427434 2095 ntBASIC8.1□□□□□ -1.11
MSX1P28360 NLRP3-204ENST00000366497 4318 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 MAPT-AS1-204ENST00000634876 3602 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 ALPK1-203ENST00000458497 5410 ntAPPRIS P3 TSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 NIM1K-204ENST00000512796 2929 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 SNX27-201ENST00000368838 1308 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 ERG-210ENST00000442448 5034 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 ESCO2-201ENST00000305188 3922 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 PACRG-203ENST00000366889 1503 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 STAU2-226ENST00000524104 2173 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 NAA16-201ENST00000379406 4347 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 THAP9-AS1-204ENST00000504792 2577 ntTSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 FAM19A1-203ENST00000496687 1917 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 BTBD3-215ENST00000618918 4486 ntAPPRIS ALT1 TSL 4 BASIC8.1□□□□□ -1.11
MSX1P28360 TAS2R5-201ENST00000247883 1151 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
MSX1P28360 Metazoa_SRP.5-201ENST00000356560 281 ntBASIC8.1□□□□□ -1.11
MSX1P28360 NR1I3-206ENST00000367984 1059 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 HEATR5A-201ENST00000382464 507 ntTSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 IGLV3-1-201ENST00000390319 398 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
MSX1P28360 OOSP1-201ENST00000398992 1270 ntBASIC8.1□□□□□ -1.11
MSX1P28360 RN7SKP33-201ENST00000410942 340 ntBASIC8.1□□□□□ -1.11
MSX1P28360 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 TRBV24OR9-2-201ENST00000416632 435 ntBASIC8.1□□□□□ -1.11
MSX1P28360 LYPLA2P3-201ENST00000417429 576 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AL591896.1-201ENST00000420211 491 ntTSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 E2F4P1-201ENST00000422443 1133 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC8.1□□□□□ -1.11
MSX1P28360 SEPHS1P1-201ENST00000426891 958 ntBASIC8.1□□□□□ -1.11
MSX1P28360 RNF11P2-201ENST00000427702 440 ntBASIC8.1□□□□□ -1.11
MSX1P28360 MOB1AP1-201ENST00000430903 535 ntBASIC8.1□□□□□ -1.11
MSX1P28360 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 COX6CP2-201ENST00000444980 225 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 MTND5P20-201ENST00000448677 143 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AC092001.1-201ENST00000453012 261 ntBASIC8.1□□□□□ -1.11
MSX1P28360 RPL7P32-201ENST00000457119 744 ntBASIC8.1□□□□□ -1.11
MSX1P28360 RN7SL749P-201ENST00000460421 290 ntBASIC8.1□□□□□ -1.11
MSX1P28360 ZBTB20-AS5-201ENST00000465249 622 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 IAH1-205ENST00000482918 863 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 RN7SL702P-201ENST00000488394 292 ntBASIC8.1□□□□□ -1.11
MSX1P28360 GAPDHP47-201ENST00000489113 999 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC8.1□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms