Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 IRS3P-201ENST00000223076 1006 ntBASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 RARRES2P11-201ENST00000635158 484 ntBASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 AC099778.1-201ENST00000568593 1911 ntBASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 AC120498.9-201ENST00000339021 3867 ntBASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
CHMP1AQ9HD42 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 AC116562.4-201ENST00000641316 2276 ntBASIC17.16■□□□□ 0.34
CHMP1AQ9HD42 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 AC116050.2-201ENST00000612102 1779 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 AC010141.2-201ENST00000452426 721 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4L2-201ENST00000561772 1275 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4L6-201ENST00000626483 1275 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4L1-201ENST00000627662 1275 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4L8-201ENST00000629013 1275 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4L3-201ENST00000630187 1275 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4L7-201ENST00000630678 1275 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DUX4L5-201ENST00000630834 1275 ntBASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.15■□□□□ 0.34
CHMP1AQ9HD42 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CHMP1AQ9HD42 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CHMP1AQ9HD42 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
CHMP1AQ9HD42 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms