Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 AC090192.1-201ENST00000517740 490 ntBASIC20.69■□□□□ 0.9
PCDH9Q9HC56 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH9Q9HC56 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 AC133552.2-202ENST00000575694 574 ntBASIC20.68■□□□□ 0.9
PCDH9Q9HC56 AL356652.1-201ENST00000615962 565 ntBASIC20.68■□□□□ 0.9
PCDH9Q9HC56 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH9Q9HC56 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.67■□□□□ 0.9
PCDH9Q9HC56 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH9Q9HC56 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH9Q9HC56 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 CYP21A1P-202ENST00000354927 1481 ntBASIC20.65■□□□□ 0.9
PCDH9Q9HC56 AL512625.2-201ENST00000417533 625 ntBASIC20.65■□□□□ 0.9
PCDH9Q9HC56 AC093787.1-201ENST00000450396 207 ntBASIC20.65■□□□□ 0.9
PCDH9Q9HC56 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 AF201337.1-201ENST00000520239 748 ntBASIC20.65■□□□□ 0.9
PCDH9Q9HC56 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 AC100791.3-201ENST00000617619 330 ntBASIC20.65■□□□□ 0.9
PCDH9Q9HC56 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 AL158211.5-201ENST00000623583 2518 ntBASIC20.65■□□□□ 0.9
PCDH9Q9HC56 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDH9Q9HC56 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDH9Q9HC56 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDH9Q9HC56 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PCDH9Q9HC56 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDH9Q9HC56 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 AC105036.2-201ENST00000569468 176 ntBASIC20.64■□□□□ 0.89
PCDH9Q9HC56 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.64■□□□□ 0.89
PCDH9Q9HC56 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDH9Q9HC56 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms