Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 AL590326.2-201ENST00000625139 305 ntBASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 LINC01568-207ENST00000641790 1380 ntBASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
UPF3AQ9H1J1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 CR392000.1-201ENST00000624770 1228 ntBASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
UPF3AQ9H1J1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 CYP2D8P-201ENST00000433633 1490 ntBASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 KRT16P1-201ENST00000399124 1418 ntBASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 AC010947.1-201ENST00000623454 693 ntBASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
UPF3AQ9H1J1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 ARMC10P1-201ENST00000313754 855 ntBASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 AL390955.1-201ENST00000428694 934 ntBASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 NAPSB-206ENST00000562112 1266 ntBASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 AC121338.2-201ENST00000622535 1744 ntBASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
UPF3AQ9H1J1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 Z98882.1-201ENST00000622160 2253 ntBASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 KRT8P20-201ENST00000423953 1409 ntBASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22.33■■□□□ 1.17
UPF3AQ9H1J1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
UPF3AQ9H1J1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
UPF3AQ9H1J1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
UPF3AQ9H1J1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
UPF3AQ9H1J1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
UPF3AQ9H1J1 AC073508.3-201ENST00000619697 1419 ntBASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms