Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS35Q96QK1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS35Q96QK1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS35Q96QK1 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
VPS35Q96QK1 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS35Q96QK1 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VPS35Q96QK1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS35Q96QK1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS35Q96QK1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
VPS35Q96QK1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS35Q96QK1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS35Q96QK1 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS35Q96QK1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS35Q96QK1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS35Q96QK1 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS35Q96QK1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS35Q96QK1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 UNC93B4-201ENST00000505679 747 ntBASIC19.86■□□□□ 0.77
VPS35Q96QK1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS35Q96QK1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS35Q96QK1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS35Q96QK1 SMG8-203ENST00000578922 2178 ntBASIC19.85■□□□□ 0.77
VPS35Q96QK1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 AP003097.1-201ENST00000530657 1135 ntBASIC19.85■□□□□ 0.77
VPS35Q96QK1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 SOX15-203ENST00000570788 1093 ntBASIC19.85■□□□□ 0.77
VPS35Q96QK1 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VPS35Q96QK1 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS35Q96QK1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS35Q96QK1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS35Q96QK1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.84■□□□□ 0.77
VPS35Q96QK1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS35Q96QK1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
VPS35Q96QK1 AC026366.1-201ENST00000488803 879 ntBASIC19.84■□□□□ 0.77
VPS35Q96QK1 MIR4651-201ENST00000582622 73 ntBASIC19.84■□□□□ 0.77
VPS35Q96QK1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 AL162377.1-201ENST00000618844 1793 ntBASIC19.84■□□□□ 0.77
VPS35Q96QK1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS35Q96QK1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS35Q96QK1 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS35Q96QK1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS35Q96QK1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS35Q96QK1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VPS35Q96QK1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS35Q96QK1 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS35Q96QK1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
VPS35Q96QK1 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS35Q96QK1 AC008403.3-201ENST00000598924 454 ntBASIC19.83■□□□□ 0.77
VPS35Q96QK1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS35Q96QK1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS35Q96QK1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS35Q96QK1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
VPS35Q96QK1 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS35Q96QK1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VPS35Q96QK1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
VPS35Q96QK1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.83■□□□□ 0.76
VPS35Q96QK1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS35Q96QK1 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms