Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 AC073314.1-201ENST00000568729 2216 ntBASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PTCHD1Q96NR3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 ABHD17AP1-201ENST00000358206 933 ntBASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AC026366.1-201ENST00000488803 879 ntBASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 UNC93B4-201ENST00000505679 747 ntBASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AC023632.3-201ENST00000521633 145 ntBASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AP003097.1-201ENST00000530657 1135 ntBASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AC006557.6-201ENST00000623071 864 ntBASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
PTCHD1Q96NR3 AC073130.3-201ENST00000624389 2278 ntBASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.86■□□□□ 0.61
PTCHD1Q96NR3 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 LINC01521-201ENST00000504184 1943 ntBASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD1Q96NR3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 HLA-G-202ENST00000376815 851 ntBASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 HLA-G-203ENST00000376818 1127 ntBASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 AC008403.3-201ENST00000598924 454 ntBASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
PTCHD1Q96NR3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms