Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AL355472.2-201ENST00000422958 438 ntBASIC20.51■□□□□ 0.87
SKA1Q96BD8 AC007322.3-201ENST00000426526 701 ntBASIC20.51■□□□□ 0.87
SKA1Q96BD8 AC098590.1-201ENST00000468126 897 ntBASIC20.51■□□□□ 0.87
SKA1Q96BD8 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.51■□□□□ 0.87
SKA1Q96BD8 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SKA1Q96BD8 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SKA1Q96BD8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.5■□□□□ 0.87
SKA1Q96BD8 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SKA1Q96BD8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SKA1Q96BD8 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SKA1Q96BD8 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SKA1Q96BD8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SKA1Q96BD8 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SKA1Q96BD8 KRT18P68-201ENST00000392293 1000 ntBASIC20.5■□□□□ 0.87
SKA1Q96BD8 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.5■□□□□ 0.87
SKA1Q96BD8 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SKA1Q96BD8 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SKA1Q96BD8 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.5■□□□□ 0.87
SKA1Q96BD8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SKA1Q96BD8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.5■□□□□ 0.87
SKA1Q96BD8 AC020907.5-201ENST00000624372 1936 ntBASIC20.49■□□□□ 0.87
SKA1Q96BD8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SKA1Q96BD8 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.49■□□□□ 0.87
SKA1Q96BD8 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SKA1Q96BD8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SKA1Q96BD8 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SKA1Q96BD8 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SKA1Q96BD8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SKA1Q96BD8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SKA1Q96BD8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SKA1Q96BD8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.48■□□□□ 0.87
SKA1Q96BD8 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SKA1Q96BD8 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SKA1Q96BD8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.47■□□□□ 0.87
SKA1Q96BD8 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SKA1Q96BD8 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SKA1Q96BD8 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.47■□□□□ 0.87
SKA1Q96BD8 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.47■□□□□ 0.87
SKA1Q96BD8 AC073648.6-201ENST00000641589 218 ntBASIC20.47■□□□□ 0.87
SKA1Q96BD8 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 KRT17P3-201ENST00000420566 1262 ntBASIC20.46■□□□□ 0.87
SKA1Q96BD8 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 RPS2P4-201ENST00000476944 856 ntBASIC20.46■□□□□ 0.87
SKA1Q96BD8 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SKA1Q96BD8 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SKA1Q96BD8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms