Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 AC060766.5-201ENST00000590539 871 ntBASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 SLC25A24-204ENST00000569674 2357 ntBASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 PRORSD1P-201ENST00000295112 541 ntBASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 PNMA6B-201ENST00000538162 1200 ntBASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM3Q8TF72 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 AC097658.1-201ENST00000475555 843 ntBASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 MIR4758-201ENST00000577688 71 ntBASIC20.45■□□□□ 0.86
SHROOM3Q8TF72 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 KRT18P29-201ENST00000397031 1267 ntBASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHROOM3Q8TF72 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 AC133041.1-202ENST00000642053 222 ntBASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHROOM3Q8TF72 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 KRT8P17-201ENST00000453110 1448 ntBASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms