Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
KRT39Q6A163 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.66■■□□□ 1.06
KRT39Q6A163 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.65■■□□□ 1.06
KRT39Q6A163 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
KRT39Q6A163 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
KRT39Q6A163 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.65■■□□□ 1.06
KRT39Q6A163 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
KRT39Q6A163 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.65■■□□□ 1.06
KRT39Q6A163 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.65■■□□□ 1.06
KRT39Q6A163 HLA-L-209ENST00000420110 1011 ntBASIC21.65■■□□□ 1.06
KRT39Q6A163 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.65■■□□□ 1.06
KRT39Q6A163 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.65■■□□□ 1.06
KRT39Q6A163 AC097658.1-201ENST00000475555 843 ntBASIC21.65■■□□□ 1.06
KRT39Q6A163 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
KRT39Q6A163 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
KRT39Q6A163 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.65■■□□□ 1.06
KRT39Q6A163 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.65■■□□□ 1.06
KRT39Q6A163 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
KRT39Q6A163 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
KRT39Q6A163 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
KRT39Q6A163 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
KRT39Q6A163 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.65■■□□□ 1.06
KRT39Q6A163 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
KRT39Q6A163 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
KRT39Q6A163 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
KRT39Q6A163 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
KRT39Q6A163 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.64■■□□□ 1.06
KRT39Q6A163 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
KRT39Q6A163 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
KRT39Q6A163 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.64■■□□□ 1.05
KRT39Q6A163 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.64■■□□□ 1.05
KRT39Q6A163 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.64■■□□□ 1.05
KRT39Q6A163 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
KRT39Q6A163 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.64■■□□□ 1.05
KRT39Q6A163 AC133041.1-202ENST00000642053 222 ntBASIC21.64■■□□□ 1.05
KRT39Q6A163 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT39Q6A163 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT39Q6A163 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.64■■□□□ 1.05
KRT39Q6A163 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT39Q6A163 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.64■■□□□ 1.05
KRT39Q6A163 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT39Q6A163 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
KRT39Q6A163 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.63■■□□□ 1.05
KRT39Q6A163 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 ID1-201ENST00000376105 1233 ntBASIC21.63■■□□□ 1.05
KRT39Q6A163 AC069152.1-201ENST00000438030 544 ntBASIC21.63■■□□□ 1.05
KRT39Q6A163 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.63■■□□□ 1.05
KRT39Q6A163 AC098934.4-201ENST00000564127 592 ntBASIC21.63■■□□□ 1.05
KRT39Q6A163 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.63■■□□□ 1.05
KRT39Q6A163 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
KRT39Q6A163 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.63■■□□□ 1.05
KRT39Q6A163 PCDHAC2-203ENST00000615316 3011 ntBASIC21.63■■□□□ 1.05
KRT39Q6A163 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
KRT39Q6A163 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT39Q6A163 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT39Q6A163 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.62■■□□□ 1.05
KRT39Q6A163 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
KRT39Q6A163 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.62■■□□□ 1.05
KRT39Q6A163 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT39Q6A163 AL691432.2-201ENST00000607222 2038 ntBASIC21.62■■□□□ 1.05
KRT39Q6A163 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
KRT39Q6A163 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT39Q6A163 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT39Q6A163 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.62■■□□□ 1.05
KRT39Q6A163 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.62■■□□□ 1.05
KRT39Q6A163 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.62■■□□□ 1.05
KRT39Q6A163 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.62■■□□□ 1.05
KRT39Q6A163 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.62■■□□□ 1.05
KRT39Q6A163 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT39Q6A163 KRT16P6-202ENST00000425692 1426 ntBASIC21.62■■□□□ 1.05
KRT39Q6A163 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT39Q6A163 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
KRT39Q6A163 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.62■■□□□ 1.05
KRT39Q6A163 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.62■■□□□ 1.05
KRT39Q6A163 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.61■■□□□ 1.05
KRT39Q6A163 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
KRT39Q6A163 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.61■■□□□ 1.05
KRT39Q6A163 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
KRT39Q6A163 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT39Q6A163 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
KRT39Q6A163 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms