Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC58Q4VC31 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 AC079140.4-201ENST00000507448 529 ntBASIC17.84■□□□□ 0.45
CCDC58Q4VC31 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 AC106739.1-201ENST00000617035 715 ntBASIC17.84■□□□□ 0.45
CCDC58Q4VC31 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC58Q4VC31 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC58Q4VC31 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC58Q4VC31 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC58Q4VC31 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC58Q4VC31 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 AC020916.1-201ENST00000587762 1774 ntBASIC17.82■□□□□ 0.44
CCDC58Q4VC31 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 AC091305.1-201ENST00000479476 895 ntBASIC17.82■□□□□ 0.44
CCDC58Q4VC31 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 PBX2P1-201ENST00000493219 1291 ntBASIC17.82■□□□□ 0.44
CCDC58Q4VC31 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 AL355001.2-201ENST00000620617 1191 ntBASIC17.82■□□□□ 0.44
CCDC58Q4VC31 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
CCDC58Q4VC31 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 MIR939-201ENST00000401314 82 ntBASIC17.81■□□□□ 0.44
CCDC58Q4VC31 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 AL358852.1-201ENST00000623174 1268 ntBASIC17.81■□□□□ 0.44
CCDC58Q4VC31 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 AP000974.1-201ENST00000623909 2387 ntBASIC17.81■□□□□ 0.44
CCDC58Q4VC31 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC58Q4VC31 KRT8P36-201ENST00000489121 1440 ntBASIC17.81■□□□□ 0.44
CCDC58Q4VC31 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms