Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PRKDCP78527 AC020928.2-201ENST00000588717 2197 ntBASIC14.63□□□□□ -0.07
PRKDCP78527 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PRKDCP78527 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 ATP5G2P1-201ENST00000433580 426 ntBASIC14.63□□□□□ -0.07
PRKDCP78527 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC14.63□□□□□ -0.07
PRKDCP78527 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.63□□□□□ -0.07
PRKDCP78527 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.63□□□□□ -0.07
PRKDCP78527 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC14.63□□□□□ -0.07
PRKDCP78527 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.63□□□□□ -0.07
PRKDCP78527 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.63□□□□□ -0.07
PRKDCP78527 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.63□□□□□ -0.07
PRKDCP78527 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.63□□□□□ -0.07
PRKDCP78527 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC14.63□□□□□ -0.07
PRKDCP78527 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.63□□□□□ -0.07
PRKDCP78527 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.63□□□□□ -0.07
PRKDCP78527 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.63□□□□□ -0.07
PRKDCP78527 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC14.63□□□□□ -0.07
PRKDCP78527 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PRKDCP78527 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PRKDCP78527 GCA-201ENST00000233612 1694 ntTSL 2 BASIC14.62□□□□□ -0.07
PRKDCP78527 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC14.62□□□□□ -0.07
PRKDCP78527 AC092338.2-201ENST00000568827 1415 ntBASIC14.62□□□□□ -0.07
PRKDCP78527 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC14.62□□□□□ -0.07
PRKDCP78527 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PRKDCP78527 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC14.62□□□□□ -0.07
PRKDCP78527 AP002469.2-201ENST00000531724 424 ntBASIC14.62□□□□□ -0.07
PRKDCP78527 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.62□□□□□ -0.07
PRKDCP78527 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.62□□□□□ -0.07
PRKDCP78527 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC14.62□□□□□ -0.07
PRKDCP78527 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PRKDCP78527 AC096733.2-201ENST00000609937 1394 ntBASIC14.62□□□□□ -0.07
PRKDCP78527 PGM5P4-201ENST00000421970 445 ntBASIC14.62□□□□□ -0.07
PRKDCP78527 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.62□□□□□ -0.07
PRKDCP78527 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
PRKDCP78527 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PRKDCP78527 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC14.62□□□□□ -0.07
PRKDCP78527 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC14.62□□□□□ -0.07
PRKDCP78527 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PRKDCP78527 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.62□□□□□ -0.07
PRKDCP78527 AC011506.1-201ENST00000474329 610 ntBASIC14.62□□□□□ -0.07
PRKDCP78527 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.62□□□□□ -0.07
PRKDCP78527 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PRKDCP78527 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
PRKDCP78527 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 AL441883.1-201ENST00000566170 1045 ntBASIC14.61□□□□□ -0.07
PRKDCP78527 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC14.61□□□□□ -0.07
PRKDCP78527 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
PRKDCP78527 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC14.61□□□□□ -0.07
PRKDCP78527 EXOC3-AS1-202ENST00000623673 1663 ntBASIC14.61□□□□□ -0.07
PRKDCP78527 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
PRKDCP78527 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 NPAP1P7-201ENST00000613027 823 ntBASIC14.61□□□□□ -0.07
PRKDCP78527 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
PRKDCP78527 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC14.61□□□□□ -0.07
PRKDCP78527 AL732292.2-201ENST00000609649 430 ntBASIC14.61□□□□□ -0.07
PRKDCP78527 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PRKDCP78527 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PRKDCP78527 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.6□□□□□ -0.07
PRKDCP78527 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PRKDCP78527 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PRKDCP78527 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.6□□□□□ -0.07
PRKDCP78527 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 AC023632.3-201ENST00000521633 145 ntBASIC14.6□□□□□ -0.07
PRKDCP78527 SLC25A6P4-201ENST00000586535 553 ntBASIC14.6□□□□□ -0.07
PRKDCP78527 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PRKDCP78527 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.6□□□□□ -0.07
PRKDCP78527 YBX1P10-201ENST00000444752 975 ntBASIC14.6□□□□□ -0.07
PRKDCP78527 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PRKDCP78527 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC14.59□□□□□ -0.07
PRKDCP78527 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PRKDCP78527 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms