Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 RCO1YMR075W 2055 nt0.04□□□□□ -2.4
CUP9P41817 ORC3YLL004W 1851 nt0.03□□□□□ -2.4
CUP9P41817 YML007C-AYML007C-A 111 nt0.03□□□□□ -2.4
CUP9P41817 YNR025CYNR025C 360 nt0.03□□□□□ -2.4
CUP9P41817 YDR371C-AYDR371C-A 105 nt0.02□□□□□ -2.41
CUP9P41817 YAR047CYAR047C 321 nt0.02□□□□□ -2.41
CUP9P41817 YOR011W-AYOR011W-A 207 nt0.02□□□□□ -2.41
CUP9P41817 PCF11YDR228C 1881 nt0.01□□□□□ -2.41
CUP9P41817 YGR174W-AYGR174W-A 87 nt0.01□□□□□ -2.41
CUP9P41817 YOR053WYOR053W 342 nt0.01□□□□□ -2.41
CUP9P41817 YDL185C-AYDL185C-A 228 nt0□□□□□ -2.41
CUP9P41817 YDR426CYDR426C 378 nt0□□□□□ -2.41
CUP9P41817 RPS26AYGL189C 360 nt0□□□□□ -2.41
CUP9P41817 TAR1YLR154W-C 375 nt-0.01□□□□□ -2.41
CUP9P41817 YNL122CYNL122C 348 nt-0.01□□□□□ -2.41
CUP9P41817 MRPL50YNR022C 420 nt-0.01□□□□□ -2.41
CUP9P41817 SGF11YPL047W 300 nt-0.02□□□□□ -2.41
CUP9P41817 LEE1YPL054W 906 nt-0.02□□□□□ -2.41
CUP9P41817 YPL225WYPL225W 441 nt-0.02□□□□□ -2.41
CUP9P41817 HMRA2YCR096C 360 nt-0.03□□□□□ -2.41
CUP9P41817 tN(GUU)QtN(GUU)Q 71 nt-0.03□□□□□ -2.41
CUP9P41817 ECL1YGR146C 636 nt-0.03□□□□□ -2.41
CUP9P41817 FYV7YLR068W 456 nt-0.03□□□□□ -2.41
CUP9P41817 YLR334CYLR334C 381 nt-0.03□□□□□ -2.41
CUP9P41817 YLR456WYLR456W 615 nt-0.03□□□□□ -2.41
CUP9P41817 YNL146WYNL146W 303 nt-0.03□□□□□ -2.41
CUP9P41817 snR190snR190 190 nt-0.03□□□□□ -2.41
CUP9P41817 YLR101CYLR101C 396 nt-0.04□□□□□ -2.42
CUP9P41817 NNF2YGR089W 2811 nt-0.05□□□□□ -2.42
CUP9P41817 COG8YML071C 1824 nt-0.05□□□□□ -2.42
CUP9P41817 YOR186C-AYOR186C-A 210 nt-0.05□□□□□ -2.42
CUP9P41817 YER006C-AYER006C-A 318 nt-0.07□□□□□ -2.42
CUP9P41817 YJL120WYJL120W 324 nt-0.07□□□□□ -2.42
CUP9P41817 YMR307C-AYMR307C-A 195 nt-0.07□□□□□ -2.42
CUP9P41817 YPL068CYPL068C 882 nt-0.07□□□□□ -2.42
CUP9P41817 NIP1YMR309C 2439 nt-0.07□□□□□ -2.42
CUP9P41817 YCR018C-AYCR018C-A 255 nt-0.08□□□□□ -2.42
CUP9P41817 ULI1YFR026C 510 nt-0.08□□□□□ -2.42
CUP9P41817 PCC1YKR095W-A 267 nt-0.08□□□□□ -2.42
CUP9P41817 RPS25BYLR333C 327 nt-0.08□□□□□ -2.42
CUP9P41817 TOM22YNL131W 459 nt-0.08□□□□□ -2.42
CUP9P41817 RPL35AYDL191W 363 nt-0.09□□□□□ -2.42
CUP9P41817 SSS1YDR086C 243 nt-0.09□□□□□ -2.42
CUP9P41817 YAR053WYAR053W 297 nt-0.09□□□□□ -2.42
CUP9P41817 COY1YKL179C 2040 nt-0.09□□□□□ -2.42
CUP9P41817 YLR232WYLR232W 348 nt-0.1□□□□□ -2.43
CUP9P41817 snR41snR41 95 nt-0.1□□□□□ -2.43
CUP9P41817 SOV1YMR066W 2697 nt-0.11□□□□□ -2.43
CUP9P41817 YNL303WYNL303W 348 nt-0.12□□□□□ -2.43
CUP9P41817 YKU70YMR284W 1809 nt-0.14□□□□□ -2.43
CUP9P41817 YCR022CYCR022C 345 nt-0.14□□□□□ -2.43
CUP9P41817 CSE1YGL238W 2883 nt-0.14□□□□□ -2.43
CUP9P41817 YOL013W-BYOL013W-B 291 nt-0.15□□□□□ -2.43
CUP9P41817 TAH1YCR060W 336 nt-0.16□□□□□ -2.44
CUP9P41817 YHR007C-AYHR007C-A 216 nt-0.16□□□□□ -2.44
CUP9P41817 YHR131W-AYHR131W-A 246 nt-0.17□□□□□ -2.44
CUP9P41817 VPS20YMR077C 666 nt-0.17□□□□□ -2.44
CUP9P41817 YPR092WYPR092W 306 nt-0.17□□□□□ -2.44
CUP9P41817 TFB5YDR079C-A 219 nt-0.18□□□□□ -2.44
CUP9P41817 YHR138CYHR138C 345 nt-0.18□□□□□ -2.44
CUP9P41817 YLL006W-AYLL006W-A 177 nt-0.18□□□□□ -2.44
CUP9P41817 YEL073CYEL073C 324 nt-0.19□□□□□ -2.44
CUP9P41817 YLR282CYLR282C 342 nt-0.19□□□□□ -2.44
CUP9P41817 CSN9YDR179C 489 nt-0.2□□□□□ -2.44
CUP9P41817 YDR354C-AYDR354C-A 144 nt-0.2□□□□□ -2.44
CUP9P41817 YJL026C-AYJL026C-A 222 nt-0.21□□□□□ -2.44
CUP9P41817 YLR434CYLR434C 384 nt-0.21□□□□□ -2.44
CUP9P41817 YKL136WYKL136W 399 nt-0.22□□□□□ -2.44
CUP9P41817 YAR029WYAR029W 225 nt-0.22□□□□□ -2.44
CUP9P41817 YDR210WYDR210W 228 nt-0.23□□□□□ -2.45
CUP9P41817 snR8snR8 190 nt-0.24□□□□□ -2.45
CUP9P41817 ATP19YOL077W-A 207 nt-0.24□□□□□ -2.45
CUP9P41817 YDL158CYDL158C 309 nt-0.26□□□□□ -2.45
CUP9P41817 YEL050W-AYEL050W-A 192 nt-0.26□□□□□ -2.45
CUP9P41817 YGR164WYGR164W 336 nt-0.26□□□□□ -2.45
CUP9P41817 snR128snR128 126 nt-0.26□□□□□ -2.45
CUP9P41817 YLR041WYLR041W 321 nt-0.27□□□□□ -2.45
CUP9P41817 YOR161W-AYOR161W-A 81 nt-0.27□□□□□ -2.45
CUP9P41817 PRM3YPL192C 402 nt-0.27□□□□□ -2.45
CUP9P41817 SNU13YEL026W 381 nt-0.31□□□□□ -2.46
CUP9P41817 snR46snR46 197 nt-0.31□□□□□ -2.46
CUP9P41817 YEL020C-BYEL020C-B 198 nt-0.33□□□□□ -2.46
CUP9P41817 YGL123C-AYGL123C-A 231 nt-0.33□□□□□ -2.46
CUP9P41817 HTB2YBL002W 396 nt-0.33□□□□□ -2.46
CUP9P41817 YLR406C-AYLR406C-A 150 nt-0.33□□□□□ -2.46
CUP9P41817 SBH2YER019C-A 267 nt-0.34□□□□□ -2.46
CUP9P41817 YIL115W-AYIL115W-A 372 nt-0.34□□□□□ -2.46
CUP9P41817 BLI1YKL061W 342 nt-0.34□□□□□ -2.46
CUP9P41817 YKL100W-AYKL100W-A 90 nt-0.35□□□□□ -2.47
CUP9P41817 YDR366CYDR366C 399 nt-0.36□□□□□ -2.47
CUP9P41817 RPS27BYHR021C 249 nt-0.36□□□□□ -2.47
CUP9P41817 YPL205CYPL205C 345 nt-0.36□□□□□ -2.47
CUP9P41817 YBR072C-AYBR072C-A 162 nt-0.36□□□□□ -2.47
CUP9P41817 YFL063WYFL063W 456 nt-0.38□□□□□ -2.47
CUP9P41817 YMR158W-BYMR158W-B 321 nt-0.39□□□□□ -2.47
CUP9P41817 CSE2YNR010W 450 nt-0.39□□□□□ -2.47
CUP9P41817 snR189snR189 189 nt-0.39□□□□□ -2.47
CUP9P41817 YBR099CYBR099C 384 nt-0.39□□□□□ -2.47
CUP9P41817 YER137W-AYER137W-A 306 nt-0.4□□□□□ -2.47
CUP9P41817 GLG1YKR058W 1851 nt-0.4□□□□□ -2.47
Retrieved 100 of 7,029 protein–RNA pairs in 32.3 ms