Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.04■■□□□ 1.28
SMARCA1P28370 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SMARCA1P28370 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SMARCA1P28370 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC23.04■■□□□ 1.28
SMARCA1P28370 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMARCA1P28370 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMARCA1P28370 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.04■■□□□ 1.28
SMARCA1P28370 LINC01521-201ENST00000504184 1943 ntBASIC23.04■■□□□ 1.28
SMARCA1P28370 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMARCA1P28370 LINC01006-201ENST00000333319 2292 ntBASIC23.03■■□□□ 1.28
SMARCA1P28370 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.03■■□□□ 1.28
SMARCA1P28370 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
SMARCA1P28370 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
SMARCA1P28370 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.03■■□□□ 1.28
SMARCA1P28370 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
SMARCA1P28370 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SMARCA1P28370 THEM4-205ENST00000489410 643 ntTSL 2 BASIC23.03■■□□□ 1.28
SMARCA1P28370 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.03■■□□□ 1.28
SMARCA1P28370 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.03■■□□□ 1.28
SMARCA1P28370 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.03■■□□□ 1.28
SMARCA1P28370 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC23.03■■□□□ 1.28
SMARCA1P28370 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SMARCA1P28370 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
SMARCA1P28370 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.03■■□□□ 1.28
SMARCA1P28370 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMARCA1P28370 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMARCA1P28370 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.02■■□□□ 1.28
SMARCA1P28370 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC23.02■■□□□ 1.28
SMARCA1P28370 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.02■■□□□ 1.28
SMARCA1P28370 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SMARCA1P28370 PRORSD1P-201ENST00000295112 541 ntBASIC23.02■■□□□ 1.28
SMARCA1P28370 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMARCA1P28370 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC23.02■■□□□ 1.28
SMARCA1P28370 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
SMARCA1P28370 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.02■■□□□ 1.28
SMARCA1P28370 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.02■■□□□ 1.28
SMARCA1P28370 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC23.02■■□□□ 1.28
SMARCA1P28370 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC23.02■■□□□ 1.28
SMARCA1P28370 AC233263.1-201ENST00000578059 224 ntBASIC23.02■■□□□ 1.28
SMARCA1P28370 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.02■■□□□ 1.28
SMARCA1P28370 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC23.02■■□□□ 1.28
SMARCA1P28370 AL121906.2-201ENST00000621597 723 ntBASIC23.02■■□□□ 1.28
SMARCA1P28370 AC092667.1-201ENST00000434301 2586 ntBASIC23.02■■□□□ 1.28
SMARCA1P28370 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMARCA1P28370 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.02■■□□□ 1.28
SMARCA1P28370 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
SMARCA1P28370 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.01■■□□□ 1.27
SMARCA1P28370 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.01■■□□□ 1.27
SMARCA1P28370 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC23.01■■□□□ 1.27
SMARCA1P28370 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC23.01■■□□□ 1.27
SMARCA1P28370 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.01■■□□□ 1.27
SMARCA1P28370 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.01■■□□□ 1.27
SMARCA1P28370 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC23.01■■□□□ 1.27
SMARCA1P28370 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.01■■□□□ 1.27
SMARCA1P28370 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.01■■□□□ 1.27
SMARCA1P28370 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.01■■□□□ 1.27
SMARCA1P28370 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.01■■□□□ 1.27
SMARCA1P28370 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMARCA1P28370 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.01■■□□□ 1.27
SMARCA1P28370 AC116351.2-201ENST00000606540 1585 ntBASIC23.01■■□□□ 1.27
SMARCA1P28370 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
SMARCA1P28370 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23■■□□□ 1.27
SMARCA1P28370 AC124283.5-201ENST00000624661 1809 ntBASIC23■■□□□ 1.27
SMARCA1P28370 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 AL157384.1-201ENST00000445995 2473 ntBASIC23■■□□□ 1.27
SMARCA1P28370 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
SMARCA1P28370 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SMARCA1P28370 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SMARCA1P28370 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SMARCA1P28370 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
SMARCA1P28370 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms