Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.32■□□□□ 0.52
MSX1P28360 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.32■□□□□ 0.52
MSX1P28360 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 HLA-B-256ENST00000639848 1089 ntBASIC18.32■□□□□ 0.52
MSX1P28360 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.32■□□□□ 0.52
MSX1P28360 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.32■□□□□ 0.52
MSX1P28360 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.32■□□□□ 0.52
MSX1P28360 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSX1P28360 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.31■□□□□ 0.52
MSX1P28360 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.31■□□□□ 0.52
MSX1P28360 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX1P28360 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX1P28360 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.31■□□□□ 0.52
MSX1P28360 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.31■□□□□ 0.52
MSX1P28360 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.31■□□□□ 0.52
MSX1P28360 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.31■□□□□ 0.52
MSX1P28360 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.31■□□□□ 0.52
MSX1P28360 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.31■□□□□ 0.52
MSX1P28360 KRT8P20-201ENST00000423953 1409 ntBASIC18.31■□□□□ 0.52
MSX1P28360 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSX1P28360 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.31■□□□□ 0.52
MSX1P28360 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.31■□□□□ 0.52
MSX1P28360 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.3■□□□□ 0.52
MSX1P28360 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 LINC01521-201ENST00000504184 1943 ntBASIC18.3■□□□□ 0.52
MSX1P28360 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 AL390719.1-204ENST00000412397 1219 ntBASIC18.3■□□□□ 0.52
MSX1P28360 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.3■□□□□ 0.52
MSX1P28360 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.3■□□□□ 0.52
MSX1P28360 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.3■□□□□ 0.52
MSX1P28360 AL031963.3-201ENST00000606441 850 ntBASIC18.3■□□□□ 0.52
MSX1P28360 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.3■□□□□ 0.52
MSX1P28360 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
MSX1P28360 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSX1P28360 KRT8P17-201ENST00000453110 1448 ntBASIC18.3■□□□□ 0.52
MSX1P28360 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MSX1P28360 PTBP1P-201ENST00000554374 1601 ntBASIC18.3■□□□□ 0.52
MSX1P28360 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.3■□□□□ 0.52
MSX1P28360 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
MSX1P28360 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX1P28360 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX1P28360 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX1P28360 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX1P28360 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.29■□□□□ 0.52
MSX1P28360 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX1P28360 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.29■□□□□ 0.52
MSX1P28360 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 AC060766.5-201ENST00000590539 871 ntBASIC18.29■□□□□ 0.52
MSX1P28360 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX1P28360 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSX1P28360 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.29■□□□□ 0.52
MSX1P28360 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MSX1P28360 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MSX1P28360 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSX1P28360 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MSX1P28360 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX1P28360 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
MSX1P28360 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
MSX1P28360 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX1P28360 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
MSX1P28360 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX1P28360 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.28■□□□□ 0.52
MSX1P28360 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.28■□□□□ 0.52
MSX1P28360 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX1P28360 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.28■□□□□ 0.52
MSX1P28360 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.28■□□□□ 0.52
MSX1P28360 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSX1P28360 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms