Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.29■■□□□ 1
RB1P06400 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RB1P06400 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.29■■□□□ 1
RB1P06400 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RB1P06400 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.29■■□□□ 1
RB1P06400 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.29■■□□□ 1
RB1P06400 EGLN1P1-201ENST00000531623 762 ntBASIC21.29■■□□□ 1
RB1P06400 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.29■■□□□ 1
RB1P06400 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.29■■□□□ 1
RB1P06400 AC026271.3-201ENST00000571884 352 ntBASIC21.29■■□□□ 1
RB1P06400 AP005242.2-201ENST00000580065 1175 ntBASIC21.29■■□□□ 1
RB1P06400 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.29■■□□□ 1
RB1P06400 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.29■■□□□ 1
RB1P06400 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RB1P06400 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.29■■□□□ 1
RB1P06400 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RB1P06400 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RB1P06400 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RB1P06400 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.29■■□□□ 1
RB1P06400 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RB1P06400 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RB1P06400 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.28■■□□□ 1
RB1P06400 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.28■■□□□ 1
RB1P06400 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.28■■□□□ 1
RB1P06400 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.28■■□□□ 1
RB1P06400 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.28■■□□□ 1
RB1P06400 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.28■■□□□ 1
RB1P06400 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.28■■□□□ 1
RB1P06400 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.28■■□□□ 1
RB1P06400 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.28■■□□□ 1
RB1P06400 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.28■■□□□ 1
RB1P06400 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.27■■□□□ 1
RB1P06400 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RB1P06400 PTBP1P-201ENST00000554374 1601 ntBASIC21.27■■□□□ 1
RB1P06400 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RB1P06400 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RB1P06400 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
RB1P06400 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.27■■□□□ 1
RB1P06400 ATP5G1P1-201ENST00000448724 379 ntBASIC21.27■■□□□ 1
RB1P06400 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
RB1P06400 AC010203.1-204ENST00000548782 407 ntBASIC21.27■■□□□ 1
RB1P06400 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.27■■□□□ 1
RB1P06400 DGCR10-201ENST00000609839 495 ntBASIC21.27■■□□□ 1
RB1P06400 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.27■■□□□ 1
RB1P06400 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.27■■□□□ 1
RB1P06400 AL445675.2-201ENST00000620291 557 ntBASIC21.27■■□□□ 1
RB1P06400 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.27■■□□□ 1
RB1P06400 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.27■■□□□ 1
RB1P06400 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
RB1P06400 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
RB1P06400 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RB1P06400 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RB1P06400 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RB1P06400 TSPY14P-201ENST00000303979 915 ntBASIC21.26■□□□□ 0.99
RB1P06400 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RB1P06400 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.26■□□□□ 0.99
RB1P06400 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RB1P06400 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.26■□□□□ 0.99
RB1P06400 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.26■□□□□ 0.99
RB1P06400 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.26■□□□□ 0.99
RB1P06400 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RB1P06400 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RB1P06400 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RB1P06400 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.26■□□□□ 0.99
RB1P06400 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RB1P06400 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.25■□□□□ 0.99
RB1P06400 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.25■□□□□ 0.99
RB1P06400 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
RB1P06400 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.25■□□□□ 0.99
RB1P06400 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.25■□□□□ 0.99
RB1P06400 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.25■□□□□ 0.99
RB1P06400 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.25■□□□□ 0.99
RB1P06400 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RB1P06400 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
RB1P06400 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RB1P06400 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RB1P06400 AC133561.1-201ENST00000568600 2415 ntBASIC21.24■□□□□ 0.99
RB1P06400 MESTP1-201ENST00000404287 994 ntBASIC21.24■□□□□ 0.99
RB1P06400 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RB1P06400 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
RB1P06400 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.24■□□□□ 0.99
RB1P06400 AC128688.1-201ENST00000487626 519 ntBASIC21.24■□□□□ 0.99
RB1P06400 C1QL1P1-201ENST00000568105 661 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms