Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CASP4-201ENST00000393150 1340 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
NKX3-1Q99801 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 DYNC1I2P1-201ENST00000435916 1838 ntBASIC6.46□□□□□ -1.38
NKX3-1Q99801 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.46□□□□□ -1.38
NKX3-1Q99801 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 MRPL22-206ENST00000522038 3162 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 PPP1R1C-202ENST00000409137 3004 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AL353898.3-201ENST00000624679 1755 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 SNRPG-201ENST00000272348 625 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 IL22-201ENST00000328087 1150 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 PSMD10-203ENST00000340200 713 ntTSL 3 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 CEP41-203ENST00000343969 1087 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 BEND6-201ENST00000370745 579 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 TMEM126B-202ENST00000393375 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 BCRP8-201ENST00000412037 255 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC127537.1-201ENST00000418183 748 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 GYG1P2-201ENST00000426437 1006 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 FTH1P10-202ENST00000430907 550 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 BX322234.2-202ENST00000435612 479 ntTSL 3 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC022816.1-201ENST00000436469 804 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC231532.1-201ENST00000438584 312 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC245047.6-201ENST00000445444 617 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC074257.1-201ENST00000446340 585 ntTSL 4 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AL138930.1-201ENST00000446952 635 ntTSL 3 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AL590490.1-201ENST00000455599 316 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 LINC01053-201ENST00000457628 771 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AL035660.2-201ENST00000461248 556 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 RPL22-208ENST00000497965 786 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC111198.1-201ENST00000505575 606 ntTSL 4 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC084026.2-201ENST00000521101 642 ntTSL 3 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AL358332.1-201ENST00000555649 813 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC233699.1-201ENST00000569955 1168 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 SNURF-202ENST00000577949 650 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 CDRT8-201ENST00000579752 467 ntTSL 3 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC018521.6-201ENST00000584276 335 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC011472.3-201ENST00000586051 906 ntTSL 3 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC243830.3-201ENST00000616810 376 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC245028.3-201ENST00000618197 285 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC079456.1-201ENST00000624010 480 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 ATP5A1P10-201ENST00000622403 1603 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AC016722.2-201ENST00000429761 1835 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 CYP3A43-202ENST00000312017 1349 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 LINC01194-202ENST00000505877 1319 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 C15orf41-214ENST00000569302 1325 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 UPP2-201ENST00000005756 2224 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 AL133243.4-201ENST00000623116 3109 ntBASIC6.45□□□□□ -1.38
NKX3-1Q99801 AL355312.2-201ENST00000455607 1541 ntTSL 5 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
NKX3-1Q99801 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
NKX3-1Q99801 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC245100.4-203ENST00000635493 1357 ntTSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 OR2AH1P-202ENST00000641232 2744 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 C1orf131-203ENST00000366651 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 C9orf92-202ENST00000380685 379 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 PCOTH-201ENST00000382133 805 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 SNORA68-201ENST00000384437 133 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 RPL5P5-201ENST00000392009 893 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 TXNDC9-202ENST00000409434 1111 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
NKX3-1Q99801 LINC02470-201ENST00000412084 979 ntTSL 2 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 LINC01392-201ENST00000419883 565 ntTSL 5 BASIC6.44□□□□□ -1.38
NKX3-1Q99801 RPL5P34-201ENST00000426545 891 ntBASIC6.44□□□□□ -1.38
NKX3-1Q99801 C2orf74-202ENST00000426997 879 ntAPPRIS P2 TSL 3 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms