Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL589763.1-201ENST00000412257 791 ntBASIC8.16□□□□□ -1.1
MSX1P28360 Z75741.2-201ENST00000417272 1167 ntBASIC8.16□□□□□ -1.1
MSX1P28360 TIMM8AP1-201ENST00000419283 295 ntBASIC8.16□□□□□ -1.1
MSX1P28360 RPL12P43-201ENST00000420608 499 ntBASIC8.16□□□□□ -1.1
MSX1P28360 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 PDZK1P1-202ENST00000425209 1350 ntBASIC8.16□□□□□ -1.1
MSX1P28360 MTND1P14-201ENST00000427400 950 ntBASIC8.16□□□□□ -1.1
MSX1P28360 LINC00892-202ENST00000429841 529 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 SRGAP3-AS3-201ENST00000432981 1223 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 LINC00379-202ENST00000438789 464 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 PCBP1-AS1-233ENST00000442326 668 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 DLSTP1-201ENST00000444241 1354 ntBASIC8.16□□□□□ -1.1
MSX1P28360 MT1G-202ENST00000444837 406 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 NEURL1-AS1-201ENST00000447820 439 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 AL356310.1-201ENST00000452024 585 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 LINC01304-204ENST00000454455 2454 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 AC026348.1-201ENST00000462549 1053 ntBASIC8.16□□□□□ -1.1
MSX1P28360 SEC16B-204ENST00000464631 2948 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 LINC02006-203ENST00000493214 812 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 OR7E157P-201ENST00000494376 911 ntBASIC8.16□□□□□ -1.1
MSX1P28360 DRAIC-201ENST00000498938 1345 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 MTATP6P22-201ENST00000507369 598 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AC010368.1-201ENST00000510160 456 ntBASIC8.16□□□□□ -1.1
MSX1P28360 KRT19P6-201ENST00000510983 209 ntBASIC8.16□□□□□ -1.1
MSX1P28360 MIR3945HG-202ENST00000511703 729 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 LINC02162-201ENST00000512521 574 ntTSL 4 BASIC8.16□□□□□ -1.1
MSX1P28360 FABP5P5-201ENST00000515537 406 ntBASIC8.16□□□□□ -1.1
MSX1P28360 RNA5SP303-201ENST00000516192 130 ntBASIC8.16□□□□□ -1.1
MSX1P28360 C8orf87-201ENST00000521906 588 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 OR7E154P-201ENST00000525174 932 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 AP005639.2-201ENST00000527592 928 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AP000916.2-201ENST00000528904 286 ntBASIC8.16□□□□□ -1.1
MSX1P28360 ELP3-219ENST00000537665 3053 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 PCED1B-AS1-205ENST00000548222 625 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 AL133371.3-201ENST00000556197 549 ntTSL 4 BASIC8.16□□□□□ -1.1
MSX1P28360 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 BGLT3-201ENST00000564523 994 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 AP001178.2-201ENST00000580007 326 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 ZNF286A-214ENST00000581529 560 ntTSL 4 BASIC8.16□□□□□ -1.1
MSX1P28360 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 AC067796.1-201ENST00000586795 496 ntBASIC8.16□□□□□ -1.1
MSX1P28360 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 AC008991.1-201ENST00000591285 537 ntTSL 4 BASIC8.16□□□□□ -1.1
MSX1P28360 U62631.1-201ENST00000597110 435 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 AC091810.1-201ENST00000603131 325 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AC022001.1-201ENST00000605193 268 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AC128687.1-201ENST00000605304 619 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AC008945.2-201ENST00000606056 604 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 AL022324.3-201ENST00000609330 747 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AL844908.1-201ENST00000609953 652 ntBASIC8.16□□□□□ -1.1
MSX1P28360 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 AC002094.4-201ENST00000613598 307 ntBASIC8.16□□□□□ -1.1
MSX1P28360 FOLR2-210ENST00000619261 1126 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 AC096720.2-201ENST00000623308 2458 ntBASIC8.16□□□□□ -1.1
MSX1P28360 SEM1-223ENST00000623498 582 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 AC105101.1-201ENST00000623698 2873 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 AC015726.3-201ENST00000624501 418 ntBASIC8.16□□□□□ -1.1
MSX1P28360 BRCC3-210ENST00000630295 954 ntTSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 AC099654.5-201ENST00000636479 350 ntBASIC8.16□□□□□ -1.1
MSX1P28360 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
MSX1P28360 AL445648.1-201ENST00000641176 886 ntBASIC8.16□□□□□ -1.1
MSX1P28360 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC8.16□□□□□ -1.1
MSX1P28360 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 EFNA5-201ENST00000333274 5335 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC8.16□□□□□ -1.1
MSX1P28360 ACTR2-201ENST00000260641 3861 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 SLC39A9-202ENST00000336643 3560 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
MSX1P28360 LINC00484-205ENST00000423719 3023 ntTSL 2 BASIC8.16□□□□□ -1.1
MSX1P28360 MAPK10-260ENST00000641047 2546 ntBASIC8.15□□□□□ -1.1
MSX1P28360 MAPK10-312ENST00000641391 2488 ntAPPRIS P2 BASIC8.15□□□□□ -1.1
MSX1P28360 MAPK10-378ENST00000642009 2463 ntAPPRIS P2 BASIC8.15□□□□□ -1.1
MSX1P28360 COLGALT2-202ENST00000367520 2325 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 CHRNA6-205ENST00000534622 1872 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 HEATR9-204ENST00000603870 1829 ntAPPRIS ALT2 TSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 HLA-DOA-201ENST00000229829 3489 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
MSX1P28360 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 GMPR2-203ENST00000399440 1652 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 GRIA1-202ENST00000340592 3170 ntAPPRIS ALT1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 AL135903.1-201ENST00000402742 1590 ntBASIC8.15□□□□□ -1.1
MSX1P28360 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 C2-201ENST00000299367 2850 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 ITPRIPL1-201ENST00000361124 4295 ntBASIC8.15□□□□□ -1.1
MSX1P28360 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 PPP2R1B-206ENST00000527614 5587 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
MSX1P28360 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
MSX1P28360 RAB11A-209ENST00000569896 1396 ntTSL 2 BASIC8.15□□□□□ -1.1
MSX1P28360 NEK2P2-201ENST00000438441 1338 ntBASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms