Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 HIST1H4E-201ENST00000615164 1487 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 RN7SKP76-201ENST00000364419 323 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AL139806.1-201ENST00000403057 1002 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 RNU6-233P-201ENST00000410845 141 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 PCBP1-AS1-212ENST00000418308 863 ntTSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AP001595.1-201ENST00000435878 516 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC007790.1-201ENST00000439081 782 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC093581.1-204ENST00000442606 390 ntTSL 3 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AL161454.1-201ENST00000446226 569 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 ENTPD1-AS1-206ENST00000449197 523 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 RN7SL508P-201ENST00000464472 303 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 GLRXP3-201ENST00000470810 321 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 RN7SL751P-201ENST00000473281 284 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC117392.1-201ENST00000487061 596 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 AL031864.2-201ENST00000498507 350 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 AL031073.1-201ENST00000503029 1139 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 RAB30-205ENST00000527633 792 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AP006437.1-202ENST00000530327 933 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 LRTOMT-212ENST00000536917 579 ntTSL 3 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC004672.2-201ENST00000537181 574 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC079313.2-201ENST00000550474 564 ntTSL 4 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 LINC02322-201ENST00000554773 338 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 FLJ21408-204ENST00000566854 601 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC087499.3-201ENST00000578210 717 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 HNRNPA1P67-201ENST00000604027 926 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 MIR7162-201ENST00000611134 69 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 AL121583.1-201ENST00000612444 682 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 LINC02034-201ENST00000635368 760 ntTSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 Metazoa_SRP.212-201ENST00000636778 248 ntBASIC6.5□□□□□ -1.37
NKX3-1Q99801 AC018793.5-201ENST00000640302 585 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 NME8-201ENST00000199447 2312 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
NKX3-1Q99801 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
NKX3-1Q99801 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 MFSD8-243ENST00000641695 1455 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 OR13H1-201ENST00000338616 927 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 RN7SKP174-201ENST00000363803 330 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 LARP1P1-201ENST00000407692 292 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 AL358942.1-201ENST00000418595 1178 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC004160.2-201ENST00000425837 563 ntTSL 4 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC092802.3-201ENST00000434207 420 ntTSL 3 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC025262.1-201ENST00000434563 589 ntTSL 5 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 GRM8-206ENST00000444921 1251 ntTSL 3 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 RHEBP1-201ENST00000448647 556 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 TDGF1P6-201ENST00000463873 448 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 CLDND1-205ENST00000502288 560 ntTSL 4 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC109811.2-201ENST00000509609 452 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC090568.2-203ENST00000521433 579 ntTSL 4 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC092818.1-201ENST00000523411 639 ntTSL 3 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 ETFRF1-210ENST00000556927 833 ntAPPRIS ALT1 TSL 3 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC063923.2-201ENST00000562158 928 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 AL021807.1-201ENST00000607175 565 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 MIR6807-201ENST00000621968 92 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 SATB1-AS1-242ENST00000627496 807 ntTSL 5 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 AC026950.2-201ENST00000633456 470 ntTSL 3 BASIC6.49□□□□□ -1.37
NKX3-1Q99801 SAMMSON-214ENST00000641395 1264 ntBASIC6.49□□□□□ -1.37
NKX3-1Q99801 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms