Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SOX5-203ENST00000396007 1379 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 MTND4P16-201ENST00000466108 1367 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AC079316.2-201ENST00000623545 1375 ntBASIC8.2□□□□□ -1.1
MSX1P28360 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 SMG6-202ENST00000354901 3473 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 ATF2-206ENST00000409635 2109 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 ADAM20P3-201ENST00000508710 2106 ntBASIC8.2□□□□□ -1.1
MSX1P28360 TNS1-202ENST00000310858 1792 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 TYW5-201ENST00000354611 4306 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 AOX1-202ENST00000374700 5074 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 AC020895.2-201ENST00000624996 1839 ntBASIC8.19□□□□□ -1.1
MSX1P28360 MRPL1-201ENST00000315567 1490 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 AC004491.1-201ENST00000623029 1882 ntBASIC8.19□□□□□ -1.1
MSX1P28360 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 OTOA-202ENST00000388956 3466 ntAPPRIS ALT2 TSL 2 BASIC8.19□□□□□ -1.1
MSX1P28360 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
MSX1P28360 AL391988.1-201ENST00000614747 1553 ntBASIC8.19□□□□□ -1.1
MSX1P28360 PPP3CA-205ENST00000507176 1958 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 AC136428.3-201ENST00000566387 1990 ntBASIC8.19□□□□□ -1.1
MSX1P28360 CNPY1-201ENST00000321736 2378 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 AC105383.1-202ENST00000505289 2820 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 ARNT-208ENST00000505755 2427 ntTSL 2 BASIC8.19□□□□□ -1.1
MSX1P28360 AP005139.1-201ENST00000580702 1647 ntBASIC8.19□□□□□ -1.1
MSX1P28360 TBC1D8B-206ENST00000481617 4098 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 CCL22-201ENST00000219235 2929 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 OR3A3-201ENST00000291231 966 ntBASIC8.19□□□□□ -1.1
MSX1P28360 PFDN5-203ENST00000351500 478 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
MSX1P28360 U6.112-201ENST00000384129 70 ntBASIC8.19□□□□□ -1.1
MSX1P28360 ATP5F1P4-201ENST00000397288 746 ntBASIC8.19□□□□□ -1.1
MSX1P28360 VDAC2P1-201ENST00000399358 958 ntBASIC8.19□□□□□ -1.1
MSX1P28360 RUBCNL-206ENST00000409879 2997 ntAPPRIS ALT2 TSL 2 BASIC8.19□□□□□ -1.1
MSX1P28360 RN7SKP166-201ENST00000410812 305 ntBASIC8.19□□□□□ -1.1
MSX1P28360 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 GTF2IP2-201ENST00000424290 697 ntBASIC8.19□□□□□ -1.1
MSX1P28360 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC8.19□□□□□ -1.1
MSX1P28360 AC073346.1-202ENST00000430610 544 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 USP9YP31-201ENST00000431405 881 ntBASIC8.19□□□□□ -1.1
MSX1P28360 OR6R1P-201ENST00000431838 940 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC241584.1-201ENST00000438469 1241 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AL354941.1-201ENST00000438600 464 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC012494.1-201ENST00000439259 1103 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 AC012307.1-201ENST00000449242 197 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 AL096855.1-201ENST00000449895 516 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 AC233982.1-201ENST00000451247 436 ntBASIC8.19□□□□□ -1.1
MSX1P28360 HNRNPA1P43-201ENST00000452680 910 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 RPL31P58-201ENST00000469001 379 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC009108.1-201ENST00000473913 796 ntBASIC8.19□□□□□ -1.1
MSX1P28360 RN7SL687P-201ENST00000480496 285 ntBASIC8.19□□□□□ -1.1
MSX1P28360 RPS6P4-201ENST00000494693 758 ntBASIC8.19□□□□□ -1.1
MSX1P28360 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 GTF2F2P1-201ENST00000511083 675 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC114781.4-201ENST00000513707 639 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AP000866.3-201ENST00000534607 433 ntBASIC8.19□□□□□ -1.1
MSX1P28360 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 Metazoa_SRP.11-201ENST00000537819 269 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC010198.2-201ENST00000550612 259 ntBASIC8.19□□□□□ -1.1
MSX1P28360 LINC02325-203ENST00000554862 733 ntTSL 4 BASIC8.19□□□□□ -1.1
MSX1P28360 AC012414.3-201ENST00000559621 748 ntTSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 NPM1P47-201ENST00000560843 856 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 LINC02124-201ENST00000570087 484 ntTSL 2 BASIC8.19□□□□□ -1.1
MSX1P28360 OR3A3-202ENST00000574571 966 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
MSX1P28360 MIR4789-201ENST00000577469 82 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 AC011474.3-201ENST00000587520 250 ntTSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 LINC01515-207ENST00000598092 496 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 DMKN-268ENST00000602781 827 ntAPPRIS ALT2 TSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 AC091946.2-201ENST00000606105 291 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AL031118.1-201ENST00000607727 2955 ntBASIC8.19□□□□□ -1.1
MSX1P28360 OR51C1P-201ENST00000608504 942 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AL451074.6-201ENST00000608512 729 ntBASIC8.19□□□□□ -1.1
MSX1P28360 CR769775.3-201ENST00000610388 219 ntBASIC8.19□□□□□ -1.1
MSX1P28360 Z99129.1-201ENST00000612510 255 ntBASIC8.19□□□□□ -1.1
MSX1P28360 uc_338.3-201ENST00000613268 181 ntBASIC8.19□□□□□ -1.1
MSX1P28360 Metazoa_SRP.120-201ENST00000614195 252 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC067904.3-201ENST00000617126 261 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AL359757.1-201ENST00000623176 255 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AC009120.7-201ENST00000623452 780 ntBASIC8.19□□□□□ -1.1
MSX1P28360 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC8.19□□□□□ -1.1
MSX1P28360 AC130456.6-201ENST00000623745 765 ntBASIC8.19□□□□□ -1.1
MSX1P28360 OR1S1-201ENST00000624470 978 ntBASIC8.19□□□□□ -1.1
MSX1P28360 TMEM55A-206ENST00000630164 171 ntTSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC8.19□□□□□ -1.1
MSX1P28360 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 CLEC4M-204ENST00000359059 1733 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC8.19□□□□□ -1.1
MSX1P28360 HSPD1P11-201ENST00000508643 1702 ntBASIC8.19□□□□□ -1.1
MSX1P28360 ABCE1-201ENST00000296577 3921 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 AC012354.1-201ENST00000425325 2685 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 KAT6A-208ENST00000485568 3592 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 MTND5P11-201ENST00000511037 1812 ntBASIC8.19□□□□□ -1.1
MSX1P28360 RNGTT-203ENST00000538899 1374 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
MSX1P28360 PAQR5-205ENST00000561153 2347 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 BMS1P2-202ENST00000532854 1858 ntTSL 5 BASIC8.19□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms