Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 EFCAB10-205ENST00000486180 1550 ntAPPRIS P5 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 METAP2-202ENST00000323666 3601 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 EXD2-202ENST00000409014 3404 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 SOCS5P2-201ENST00000449637 1359 ntBASIC8.22□□□□□ -1.09
MSX1P28360 SLMAP-220ENST00000495364 1383 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 MOSPD2-204ENST00000482354 1870 ntTSL 5 BASIC8.21□□□□□ -1.09
MSX1P28360 DIAPH3-202ENST00000377908 3549 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.09
MSX1P28360 RASSF6-201ENST00000307439 5994 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.09
MSX1P28360 PFKM-210ENST00000547587 2867 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
MSX1P28360 ZNF565-203ENST00000392173 1931 ntAPPRIS P2 TSL 2 BASIC8.21□□□□□ -1.09
MSX1P28360 ARHGAP25-209ENST00000479844 1933 ntTSL 5 BASIC8.21□□□□□ -1.09
MSX1P28360 ITIH2-201ENST00000358415 3193 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
MSX1P28360 CNOT6LP1-201ENST00000559681 1462 ntBASIC8.21□□□□□ -1.09
MSX1P28360 TP63-212ENST00000456148 1749 ntAPPRIS ALT1 TSL 5 BASIC8.21□□□□□ -1.09
MSX1P28360 AC007920.2-201ENST00000636210 1973 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
MSX1P28360 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 AC009102.1-201ENST00000564074 1777 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 PSEN1-205ENST00000406768 4062 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 OR4G2P-201ENST00000328113 903 ntBASIC8.21□□□□□ -1.1
MSX1P28360 DEFA5-201ENST00000330590 449 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 RN7SKP22-201ENST00000365097 293 ntBASIC8.21□□□□□ -1.1
MSX1P28360 FAM204BP-201ENST00000369171 701 ntBASIC8.21□□□□□ -1.1
MSX1P28360 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 MT-TH-201ENST00000387441 69 ntBASIC8.21□□□□□ -1.1
MSX1P28360 ST13P16-201ENST00000401760 781 ntBASIC8.21□□□□□ -1.1
MSX1P28360 AGR3-202ENST00000402239 563 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 ERHP2-201ENST00000402323 299 ntBASIC8.21□□□□□ -1.1
MSX1P28360 OR52N3P-201ENST00000413417 934 ntBASIC8.21□□□□□ -1.1
MSX1P28360 XIST-201ENST00000416330 750 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 NUP35P2-201ENST00000416748 943 ntBASIC8.21□□□□□ -1.1
MSX1P28360 AL160175.1-201ENST00000428124 247 ntBASIC8.21□□□□□ -1.1
MSX1P28360 SNAI1P1-201ENST00000428587 777 ntBASIC8.21□□□□□ -1.1
MSX1P28360 TRMT112P4-201ENST00000429016 379 ntBASIC8.21□□□□□ -1.1
MSX1P28360 VN1R54P-201ENST00000435210 1049 ntBASIC8.21□□□□□ -1.1
MSX1P28360 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 AC245517.2-201ENST00000442890 346 ntBASIC8.21□□□□□ -1.1
MSX1P28360 PRB4-202ENST00000445719 586 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 AL353072.1-201ENST00000446021 442 ntBASIC8.21□□□□□ -1.1
MSX1P28360 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 SAP18P3-201ENST00000449663 396 ntBASIC8.21□□□□□ -1.1
MSX1P28360 TPMTP4-201ENST00000450749 678 ntBASIC8.21□□□□□ -1.1
MSX1P28360 FGF7P6-202ENST00000451282 293 ntBASIC8.21□□□□□ -1.1
MSX1P28360 ZNF32-AS1-201ENST00000453284 434 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 AL606490.6-201ENST00000453735 523 ntBASIC8.21□□□□□ -1.1
MSX1P28360 AL357874.2-201ENST00000457044 679 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 AC022973.1-201ENST00000490340 575 ntBASIC8.21□□□□□ -1.1
MSX1P28360 RPS27AP16-201ENST00000492222 470 ntBASIC8.21□□□□□ -1.1
MSX1P28360 OR4G11P-201ENST00000492842 939 ntBASIC8.21□□□□□ -1.1
MSX1P28360 RN7SL653P-201ENST00000494134 293 ntBASIC8.21□□□□□ -1.1
MSX1P28360 MYL12BP2-201ENST00000503948 512 ntBASIC8.21□□□□□ -1.1
MSX1P28360 MICE-207ENST00000510438 1157 ntBASIC8.21□□□□□ -1.1
MSX1P28360 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC8.21□□□□□ -1.1
MSX1P28360 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC8.21□□□□□ -1.1
MSX1P28360 AC083805.2-201ENST00000549683 610 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 AL121579.1-201ENST00000555129 305 ntBASIC8.21□□□□□ -1.1
MSX1P28360 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 AC011767.1-203ENST00000559762 529 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC8.21□□□□□ -1.1
MSX1P28360 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 RPL23AP86-201ENST00000573796 541 ntBASIC8.21□□□□□ -1.1
MSX1P28360 GATA6-AS1-201ENST00000579431 481 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 SSH2-209ENST00000579954 428 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 MIR4518-201ENST00000580665 83 ntBASIC8.21□□□□□ -1.1
MSX1P28360 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 AC007785.3-201ENST00000595955 544 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 AC019131.2-201ENST00000609071 870 ntBASIC8.21□□□□□ -1.1
MSX1P28360 AC092954.2-201ENST00000609103 430 ntBASIC8.21□□□□□ -1.1
MSX1P28360 TTR-205ENST00000613781 556 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 MIR7150-201ENST00000614393 94 ntBASIC8.21□□□□□ -1.1
MSX1P28360 SNX18P5-201ENST00000619873 868 ntBASIC8.21□□□□□ -1.1
MSX1P28360 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
MSX1P28360 AC010480.1-201ENST00000624823 684 ntBASIC8.21□□□□□ -1.1
MSX1P28360 AC005086.2-201ENST00000624939 228 ntBASIC8.21□□□□□ -1.1
MSX1P28360 AC010223.1-201ENST00000625092 279 ntBASIC8.21□□□□□ -1.1
MSX1P28360 ITFG2-AS1-202ENST00000636122 962 ntTSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 ACSL6-206ENST00000379255 2301 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 LRP2BP-201ENST00000328559 5157 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 SLC17A1-201ENST00000244527 1844 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 VSIG4-201ENST00000374737 1834 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 PIGN-201ENST00000357637 4723 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 CEACAM21-201ENST00000187608 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 NDUFB5-214ENST00000493866 4046 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 GOSR2-220ENST00000638838 3266 ntAPPRIS ALT1 TSL 5 BASIC8.21□□□□□ -1.1
MSX1P28360 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
MSX1P28360 PLCE1-AS1-203ENST00000596633 1683 ntTSL 3 BASIC8.21□□□□□ -1.1
MSX1P28360 AC009403.2-202ENST00000636307 3956 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 IL15-202ENST00000320650 1447 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 STAT6-201ENST00000300134 4034 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 ZCWPW2-201ENST00000383768 1716 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms