Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS35Q96QK1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS35Q96QK1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS35Q96QK1 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS35Q96QK1 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS35Q96QK1 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS35Q96QK1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VPS35Q96QK1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS35Q96QK1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VPS35Q96QK1 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.91■□□□□ 0.78
VPS35Q96QK1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 AL031963.3-201ENST00000606441 850 ntBASIC19.91■□□□□ 0.78
VPS35Q96QK1 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VPS35Q96QK1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS35Q96QK1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 KRT8P20-201ENST00000423953 1409 ntBASIC19.9■□□□□ 0.78
VPS35Q96QK1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VPS35Q96QK1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS35Q96QK1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
VPS35Q96QK1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VPS35Q96QK1 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 HLA-G-202ENST00000376815 851 ntBASIC19.89■□□□□ 0.77
VPS35Q96QK1 HLA-G-203ENST00000376818 1127 ntBASIC19.89■□□□□ 0.77
VPS35Q96QK1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 AL390719.1-204ENST00000412397 1219 ntBASIC19.89■□□□□ 0.77
VPS35Q96QK1 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS35Q96QK1 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.89■□□□□ 0.77
VPS35Q96QK1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS35Q96QK1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 KRT8P17-201ENST00000453110 1448 ntBASIC19.88■□□□□ 0.77
VPS35Q96QK1 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS35Q96QK1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS35Q96QK1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms