Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 AC012306.2-201ENST00000609350 630 ntBASIC20.19■□□□□ 0.82
HMGB4Q8WW32 AL353708.3-201ENST00000610272 989 ntBASIC20.19■□□□□ 0.82
HMGB4Q8WW32 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB4Q8WW32 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 RCN1P1-201ENST00000400413 996 ntBASIC20.18■□□□□ 0.82
HMGB4Q8WW32 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB4Q8WW32 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 AC121338.2-201ENST00000622535 1744 ntBASIC20.17■□□□□ 0.82
HMGB4Q8WW32 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 MMP23A-201ENST00000234610 1017 ntBASIC20.17■□□□□ 0.82
HMGB4Q8WW32 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 AC004264.1-201ENST00000608354 794 ntBASIC20.17■□□□□ 0.82
HMGB4Q8WW32 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 AL024507.2-201ENST00000606070 2574 ntBASIC20.17■□□□□ 0.82
HMGB4Q8WW32 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB4Q8WW32 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 AC073195.1-201ENST00000607241 877 ntBASIC20.16■□□□□ 0.82
HMGB4Q8WW32 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB4Q8WW32 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB4Q8WW32 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.15■□□□□ 0.82
HMGB4Q8WW32 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
HMGB4Q8WW32 HLA-G-202ENST00000376815 851 ntBASIC20.15■□□□□ 0.82
HMGB4Q8WW32 HLA-G-203ENST00000376818 1127 ntBASIC20.15■□□□□ 0.82
HMGB4Q8WW32 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
HMGB4Q8WW32 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HMGB4Q8WW32 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB4Q8WW32 AP002982.1-201ENST00000492365 877 ntBASIC20.15■□□□□ 0.82
HMGB4Q8WW32 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.15■□□□□ 0.82
HMGB4Q8WW32 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms