Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 KRT8P9-201ENST00000558927 1449 ntBASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC26.62■■□□□ 1.85
USHBP1Q8N6Y0 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 H19-201ENST00000411754 1788 ntTSL 5 BASIC26.61■■□□□ 1.85
USHBP1Q8N6Y0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
USHBP1Q8N6Y0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USHBP1Q8N6Y0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
USHBP1Q8N6Y0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC26.58■■□□□ 1.84
USHBP1Q8N6Y0 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.84
USHBP1Q8N6Y0 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 AC073195.1-201ENST00000607241 877 ntBASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC26.57■■□□□ 1.84
USHBP1Q8N6Y0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 AC079598.2-202ENST00000546624 1451 ntBASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 MMP23A-201ENST00000234610 1017 ntBASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 RBM17P1-201ENST00000453646 1190 ntBASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 RN7SL850P-201ENST00000579959 291 ntBASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 REXO1L10P-201ENST00000615707 1290 ntBASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USHBP1Q8N6Y0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 AP000525.1-201ENST00000608286 694 ntBASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC26.55■■□□□ 1.84
USHBP1Q8N6Y0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms