Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SKA3Q8IX90 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SKA3Q8IX90 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SKA3Q8IX90 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.73■□□□□ 0.43
SKA3Q8IX90 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SKA3Q8IX90 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SKA3Q8IX90 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SKA3Q8IX90 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SKA3Q8IX90 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 HLA-L-209ENST00000420110 1011 ntBASIC17.72■□□□□ 0.43
SKA3Q8IX90 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 AL138781.1-201ENST00000566567 1274 ntBASIC17.72■□□□□ 0.43
SKA3Q8IX90 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SKA3Q8IX90 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.72■□□□□ 0.43
SKA3Q8IX90 DPP3P2-201ENST00000416030 1696 ntBASIC17.71■□□□□ 0.43
SKA3Q8IX90 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.71■□□□□ 0.43
SKA3Q8IX90 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.71■□□□□ 0.43
SKA3Q8IX90 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 ID1-201ENST00000376105 1233 ntBASIC17.71■□□□□ 0.43
SKA3Q8IX90 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
SKA3Q8IX90 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.71■□□□□ 0.43
SKA3Q8IX90 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.71■□□□□ 0.43
SKA3Q8IX90 AC092118.2-201ENST00000613495 667 ntBASIC17.71■□□□□ 0.43
SKA3Q8IX90 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SKA3Q8IX90 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SKA3Q8IX90 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.71■□□□□ 0.42
SKA3Q8IX90 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SKA3Q8IX90 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.71■□□□□ 0.42
SKA3Q8IX90 AL512408.1-201ENST00000569378 2000 ntBASIC17.71■□□□□ 0.42
SKA3Q8IX90 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.7■□□□□ 0.42
SKA3Q8IX90 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 C2orf69P4-201ENST00000565394 541 ntBASIC17.7■□□□□ 0.42
SKA3Q8IX90 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 MIR4758-201ENST00000577688 71 ntBASIC17.7■□□□□ 0.42
SKA3Q8IX90 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.7■□□□□ 0.42
SKA3Q8IX90 SMG8-203ENST00000578922 2178 ntBASIC17.7■□□□□ 0.42
SKA3Q8IX90 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SKA3Q8IX90 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SKA3Q8IX90 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms