Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RIF1Q5UIP0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
RIF1Q5UIP0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 FAAHP1-202ENST00000446499 1238 ntBASIC19.67■□□□□ 0.74
RIF1Q5UIP0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 MIR3652-201ENST00000579335 131 ntBASIC19.67■□□□□ 0.74
RIF1Q5UIP0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RIF1Q5UIP0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 HOMER2P1-201ENST00000455653 964 ntBASIC19.66■□□□□ 0.74
RIF1Q5UIP0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
RIF1Q5UIP0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 AL136038.3-201ENST00000561909 1096 ntBASIC19.65■□□□□ 0.74
RIF1Q5UIP0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.65■□□□□ 0.74
RIF1Q5UIP0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RIF1Q5UIP0 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.64■□□□□ 0.74
RIF1Q5UIP0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
RIF1Q5UIP0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.64■□□□□ 0.74
RIF1Q5UIP0 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 AC020928.2-201ENST00000588717 2197 ntBASIC19.64■□□□□ 0.73
RIF1Q5UIP0 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.64■□□□□ 0.73
RIF1Q5UIP0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RIF1Q5UIP0 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.63■□□□□ 0.73
RIF1Q5UIP0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.63■□□□□ 0.73
RIF1Q5UIP0 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.62■□□□□ 0.73
RIF1Q5UIP0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.62■□□□□ 0.73
RIF1Q5UIP0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.62■□□□□ 0.73
RIF1Q5UIP0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RIF1Q5UIP0 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RIF1Q5UIP0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms