Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RFX4Q33E94 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RFX4Q33E94 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.63■□□□□ 0.57
RFX4Q33E94 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.63■□□□□ 0.57
RFX4Q33E94 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.63■□□□□ 0.57
RFX4Q33E94 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.63■□□□□ 0.57
RFX4Q33E94 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX4Q33E94 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.62■□□□□ 0.57
RFX4Q33E94 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.62■□□□□ 0.57
RFX4Q33E94 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.62■□□□□ 0.57
RFX4Q33E94 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.62■□□□□ 0.57
RFX4Q33E94 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.62■□□□□ 0.57
RFX4Q33E94 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.62■□□□□ 0.57
RFX4Q33E94 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RFX4Q33E94 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RFX4Q33E94 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX4Q33E94 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
RFX4Q33E94 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RFX4Q33E94 Z82202.1-201ENST00000623446 1880 ntBASIC18.61■□□□□ 0.57
RFX4Q33E94 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.61■□□□□ 0.57
RFX4Q33E94 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.61■□□□□ 0.57
RFX4Q33E94 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.61■□□□□ 0.57
RFX4Q33E94 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX4Q33E94 TREX1-205ENST00000625293 1783 ntBASIC18.6■□□□□ 0.57
RFX4Q33E94 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RFX4Q33E94 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 KRT87P-202ENST00000534226 1464 ntBASIC18.6■□□□□ 0.57
RFX4Q33E94 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RFX4Q33E94 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.6■□□□□ 0.57
RFX4Q33E94 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.6■□□□□ 0.57
RFX4Q33E94 AC079140.4-201ENST00000507448 529 ntBASIC18.6■□□□□ 0.57
RFX4Q33E94 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.6■□□□□ 0.57
RFX4Q33E94 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
RFX4Q33E94 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.6■□□□□ 0.57
RFX4Q33E94 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFX4Q33E94 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RFX4Q33E94 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RFX4Q33E94 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.59■□□□□ 0.57
RFX4Q33E94 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RFX4Q33E94 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.59■□□□□ 0.57
RFX4Q33E94 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.59■□□□□ 0.57
RFX4Q33E94 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.59■□□□□ 0.57
RFX4Q33E94 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 AL139246.5-201ENST00000606645 996 ntBASIC18.59■□□□□ 0.57
RFX4Q33E94 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX4Q33E94 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RFX4Q33E94 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.59■□□□□ 0.57
RFX4Q33E94 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RFX4Q33E94 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms