Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC006058.3-201ENST00000606217 1069 ntBASIC18.59■□□□□ 0.57
RNF4P78317 AL031963.3-201ENST00000606441 850 ntBASIC18.59■□□□□ 0.57
RNF4P78317 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.59■□□□□ 0.57
RNF4P78317 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.59■□□□□ 0.57
RNF4P78317 AC073314.1-201ENST00000568729 2216 ntBASIC18.59■□□□□ 0.57
RNF4P78317 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.59■□□□□ 0.57
RNF4P78317 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RNF4P78317 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RNF4P78317 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.59■□□□□ 0.57
RNF4P78317 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 AC020907.5-201ENST00000624372 1936 ntBASIC18.59■□□□□ 0.57
RNF4P78317 KRT8P20-201ENST00000423953 1409 ntBASIC18.58■□□□□ 0.57
RNF4P78317 KRT8P17-201ENST00000453110 1448 ntBASIC18.58■□□□□ 0.57
RNF4P78317 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RNF4P78317 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RNF4P78317 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
RNF4P78317 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RNF4P78317 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RNF4P78317 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.58■□□□□ 0.56
RNF4P78317 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
RNF4P78317 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.58■□□□□ 0.56
RNF4P78317 ITM2C-210ENST00000620962 501 ntBASIC18.58■□□□□ 0.56
RNF4P78317 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.58■□□□□ 0.56
RNF4P78317 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RNF4P78317 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
RNF4P78317 FEM1AP1-201ENST00000431297 1995 ntBASIC18.57■□□□□ 0.56
RNF4P78317 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF4P78317 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.57■□□□□ 0.56
RNF4P78317 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 KRT18P29-201ENST00000397031 1267 ntBASIC18.57■□□□□ 0.56
RNF4P78317 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.57■□□□□ 0.56
RNF4P78317 AC120498.8-201ENST00000614275 531 ntBASIC18.57■□□□□ 0.56
RNF4P78317 TMEM191A-211ENST00000637163 1067 ntBASIC18.57■□□□□ 0.56
RNF4P78317 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF4P78317 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.57■□□□□ 0.56
RNF4P78317 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.57■□□□□ 0.56
RNF4P78317 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
RNF4P78317 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RNF4P78317 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 AP005212.1-201ENST00000581547 1997 ntBASIC18.56■□□□□ 0.56
RNF4P78317 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.56■□□□□ 0.56
RNF4P78317 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
RNF4P78317 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 KRT17P3-201ENST00000420566 1262 ntBASIC18.56■□□□□ 0.56
RNF4P78317 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.56■□□□□ 0.56
RNF4P78317 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.56■□□□□ 0.56
RNF4P78317 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.56■□□□□ 0.56
RNF4P78317 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.56■□□□□ 0.56
RNF4P78317 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RNF4P78317 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 SMG8-203ENST00000578922 2178 ntBASIC18.56■□□□□ 0.56
RNF4P78317 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.56■□□□□ 0.56
RNF4P78317 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RNF4P78317 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.55■□□□□ 0.56
RNF4P78317 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
RNF4P78317 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RNF4P78317 POM121L13P-201ENST00000422362 380 ntBASIC18.55■□□□□ 0.56
RNF4P78317 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.55■□□□□ 0.56
RNF4P78317 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms