Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.2■□□□□ 0.98
BDNFP23560 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.2■□□□□ 0.98
BDNFP23560 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.2■□□□□ 0.98
BDNFP23560 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.2■□□□□ 0.98
BDNFP23560 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.2■□□□□ 0.98
BDNFP23560 AL359736.2-201ENST00000621992 437 ntBASIC21.2■□□□□ 0.98
BDNFP23560 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BDNFP23560 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.2■□□□□ 0.98
BDNFP23560 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
BDNFP23560 AC124283.5-201ENST00000624661 1809 ntBASIC21.2■□□□□ 0.98
BDNFP23560 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
BDNFP23560 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.19■□□□□ 0.98
BDNFP23560 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.19■□□□□ 0.98
BDNFP23560 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.19■□□□□ 0.98
BDNFP23560 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.19■□□□□ 0.98
BDNFP23560 RPPH1-201ENST00000516869 333 ntBASIC21.19■□□□□ 0.98
BDNFP23560 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.19■□□□□ 0.98
BDNFP23560 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
BDNFP23560 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
BDNFP23560 AL031963.3-201ENST00000606441 850 ntBASIC21.19■□□□□ 0.98
BDNFP23560 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
BDNFP23560 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.19■□□□□ 0.98
BDNFP23560 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BDNFP23560 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
BDNFP23560 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
BDNFP23560 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
BDNFP23560 KRT8P20-201ENST00000423953 1409 ntBASIC21.19■□□□□ 0.98
BDNFP23560 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.18■□□□□ 0.98
BDNFP23560 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BDNFP23560 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.18■□□□□ 0.98
BDNFP23560 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.18■□□□□ 0.98
BDNFP23560 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
BDNFP23560 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BDNFP23560 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
BDNFP23560 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BDNFP23560 HLA-G-202ENST00000376815 851 ntBASIC21.18■□□□□ 0.98
BDNFP23560 HLA-G-203ENST00000376818 1127 ntBASIC21.18■□□□□ 0.98
BDNFP23560 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.18■□□□□ 0.98
BDNFP23560 MTDHP1-201ENST00000605323 784 ntBASIC21.18■□□□□ 0.98
BDNFP23560 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.18■□□□□ 0.98
BDNFP23560 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
BDNFP23560 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
BDNFP23560 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.17■□□□□ 0.98
BDNFP23560 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
BDNFP23560 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.17■□□□□ 0.98
BDNFP23560 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
BDNFP23560 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
BDNFP23560 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 KRT8P17-201ENST00000453110 1448 ntBASIC21.17■□□□□ 0.98
BDNFP23560 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.17■□□□□ 0.98
BDNFP23560 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
BDNFP23560 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
BDNFP23560 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.17■□□□□ 0.98
BDNFP23560 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
BDNFP23560 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
BDNFP23560 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
BDNFP23560 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.16■□□□□ 0.98
BDNFP23560 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
BDNFP23560 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.16■□□□□ 0.98
BDNFP23560 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.16■□□□□ 0.98
BDNFP23560 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.16■□□□□ 0.98
BDNFP23560 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.16■□□□□ 0.98
BDNFP23560 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
BDNFP23560 FAM197Y4-202ENST00000622692 608 ntBASIC21.16■□□□□ 0.98
BDNFP23560 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
BDNFP23560 SMG8-203ENST00000578922 2178 ntBASIC21.15■□□□□ 0.98
BDNFP23560 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.15■□□□□ 0.98
BDNFP23560 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.15■□□□□ 0.98
BDNFP23560 AL023875.1-201ENST00000640777 796 ntBASIC21.15■□□□□ 0.98
BDNFP23560 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
BDNFP23560 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
BDNFP23560 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BDNFP23560 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BDNFP23560 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.14■□□□□ 0.98
BDNFP23560 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
BDNFP23560 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
BDNFP23560 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.14■□□□□ 0.98
BDNFP23560 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms