Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXN3O00409 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.52■■□□□ 1.04
FOXN3O00409 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.03
FOXN3O00409 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
FOXN3O00409 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.51■■□□□ 1.03
FOXN3O00409 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.51■■□□□ 1.03
FOXN3O00409 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.51■■□□□ 1.03
FOXN3O00409 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.51■■□□□ 1.03
FOXN3O00409 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 AL589743.5-201ENST00000616611 1050 ntBASIC21.51■■□□□ 1.03
FOXN3O00409 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.51■■□□□ 1.03
FOXN3O00409 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.51■■□□□ 1.03
FOXN3O00409 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 AC125437.2-201ENST00000625180 2167 ntBASIC21.51■■□□□ 1.03
FOXN3O00409 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.51■■□□□ 1.03
FOXN3O00409 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
FOXN3O00409 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXN3O00409 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXN3O00409 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 KRT8P17-201ENST00000453110 1448 ntBASIC21.5■■□□□ 1.03
FOXN3O00409 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
FOXN3O00409 AC105036.2-201ENST00000569468 176 ntBASIC21.5■■□□□ 1.03
FOXN3O00409 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
FOXN3O00409 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXN3O00409 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXN3O00409 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
FOXN3O00409 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXN3O00409 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.5■■□□□ 1.03
FOXN3O00409 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXN3O00409 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
FOXN3O00409 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.49■■□□□ 1.03
FOXN3O00409 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 MIR663A-201ENST00000385250 93 ntBASIC21.49■■□□□ 1.03
FOXN3O00409 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 AF201337.1-201ENST00000520239 748 ntBASIC21.49■■□□□ 1.03
FOXN3O00409 C2orf69P4-201ENST00000565394 541 ntBASIC21.49■■□□□ 1.03
FOXN3O00409 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
FOXN3O00409 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXN3O00409 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.48■■□□□ 1.03
FOXN3O00409 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
FOXN3O00409 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
FOXN3O00409 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.48■■□□□ 1.03
FOXN3O00409 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXN3O00409 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.48■■□□□ 1.03
FOXN3O00409 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.48■■□□□ 1.03
FOXN3O00409 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.48■■□□□ 1.03
FOXN3O00409 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.47■■□□□ 1.03
FOXN3O00409 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.47■■□□□ 1.03
FOXN3O00409 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 MKRN4P-201ENST00000444706 1521 ntBASIC21.47■■□□□ 1.03
FOXN3O00409 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXN3O00409 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.47■■□□□ 1.03
FOXN3O00409 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.47■■□□□ 1.03
FOXN3O00409 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.47■■□□□ 1.03
FOXN3O00409 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXN3O00409 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.47■■□□□ 1.03
FOXN3O00409 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
FOXN3O00409 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXN3O00409 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms