Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 AC034268.1-201ENST00000441047 882 ntBASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 AC087633.2-202ENST00000565166 1439 ntBASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 AL591742.1-201ENST00000604433 565 ntBASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 AC016405.3-201ENST00000607710 860 ntBASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 CYP21A1P-202ENST00000354927 1481 ntBASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV3A0A0B4J244 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.14■□□□□ 0.18
TRAV3A0A0B4J244 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV3A0A0B4J244 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 AC087623.3-201ENST00000607047 1098 ntBASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV3A0A0B4J244 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 TMEM179-206ENST00000616017 1645 ntBASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAV3A0A0B4J244 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms