Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 BBS9-203ENST00000355070 4004 ntAPPRIS P3 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 STARD4-212ENST00000512160 3500 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 MELK-208ENST00000536987 2125 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 KIF23-203ENST00000395392 3357 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 CDRT1-203ENST00000395667 3016 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 EPB41L2-221ENST00000529208 3023 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 PSG8-201ENST00000306511 1441 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 EIF4G3-202ENST00000356916 2179 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 PPP1R14D-201ENST00000299174 757 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 IDSP1-201ENST00000324799 376 ntBASIC8.23□□□□□ -1.09
MSX1P28360 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
MSX1P28360 SVBP-201ENST00000372521 658 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 RNU6-1119P-201ENST00000384349 108 ntBASIC8.23□□□□□ -1.09
MSX1P28360 RNU6-1011P-201ENST00000384668 107 ntBASIC8.23□□□□□ -1.09
MSX1P28360 RNU6-114P-201ENST00000384704 105 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC019178.1-201ENST00000392337 440 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 HMGN1P14-201ENST00000412459 517 ntBASIC8.23□□□□□ -1.09
MSX1P28360 RCAN3-203ENST00000412742 667 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 PGBD4P8-201ENST00000412993 562 ntBASIC8.23□□□□□ -1.09
MSX1P28360 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 RPSAP21-201ENST00000414293 885 ntBASIC8.23□□□□□ -1.09
MSX1P28360 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 AC098592.1-201ENST00000419352 333 ntBASIC8.23□□□□□ -1.09
MSX1P28360 RPL7P30-201ENST00000420888 709 ntBASIC8.23□□□□□ -1.09
MSX1P28360 IPO9-AS1-202ENST00000421159 456 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 CELSR3-AS1-201ENST00000421275 196 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 AC106017.1-202ENST00000424109 428 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 RPL13AP7-201ENST00000425147 611 ntBASIC8.23□□□□□ -1.09
MSX1P28360 RWDD4P2-201ENST00000426392 563 ntBASIC8.23□□□□□ -1.09
MSX1P28360 PPP1R14D-202ENST00000427255 747 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 MTND1P2-201ENST00000430604 821 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC007952.3-202ENST00000435028 428 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 LINC01508-202ENST00000436671 755 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 RPL5P27-201ENST00000437011 881 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AL159166.1-201ENST00000437430 329 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 AC122718.1-201ENST00000439448 744 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AP000532.1-201ENST00000440999 177 ntBASIC8.23□□□□□ -1.09
MSX1P28360 ZNF341-AS1-203ENST00000443171 642 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 WASF1P1-201ENST00000447560 1131 ntBASIC8.23□□□□□ -1.09
MSX1P28360 PMS2P10-201ENST00000447708 612 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AL109933.1-201ENST00000448126 292 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 AP000266.1-201ENST00000450936 582 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 SUN3-208ENST00000453192 801 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 ZNF114P1-201ENST00000453500 292 ntBASIC8.23□□□□□ -1.09
MSX1P28360 TUBB4BP2-201ENST00000454125 798 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AL357037.1-201ENST00000454758 322 ntBASIC8.23□□□□□ -1.09
MSX1P28360 FAM133DP-201ENST00000464802 691 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC023245.1-201ENST00000468501 517 ntBASIC8.23□□□□□ -1.09
MSX1P28360 PGAM1P9-201ENST00000503887 755 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC073848.1-201ENST00000514339 457 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 RPL23AP96-201ENST00000514593 591 ntBASIC8.23□□□□□ -1.09
MSX1P28360 IGLV3-29-201ENST00000520084 244 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC022730.3-201ENST00000521051 736 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 AC104117.2-201ENST00000523735 515 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 PGA4-202ENST00000537932 840 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 PGA3-204ENST00000538258 867 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 LMO3-222ENST00000540445 906 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 PGA3-207ENST00000543125 968 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 PGA4-206ENST00000544899 867 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 FCF1-203ENST00000553615 954 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 HNRNPCP1-201ENST00000556181 766 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AL049833.1-201ENST00000557745 840 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 CYP4A26P-201ENST00000563017 196 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC092325.1-201ENST00000566449 554 ntBASIC8.23□□□□□ -1.09
MSX1P28360 ANKRD36BP2-206ENST00000575193 1245 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC8.23□□□□□ -1.09
MSX1P28360 CD300LF-208ENST00000581500 720 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 EDRF1-AS1-202ENST00000593871 592 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 AL031281.1-201ENST00000604049 488 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC007684.1-201ENST00000609671 477 ntBASIC8.23□□□□□ -1.09
MSX1P28360 DLEU2_1.1-201ENST00000612089 120 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC080112.3-201ENST00000612552 880 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC009237.16-201ENST00000612987 506 ntBASIC8.23□□□□□ -1.09
MSX1P28360 DLEU2_1.2-201ENST00000614667 120 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AL162574.1-201ENST00000615702 950 ntBASIC8.23□□□□□ -1.09
MSX1P28360 Metazoa_SRP.126-201ENST00000618354 266 ntBASIC8.23□□□□□ -1.09
MSX1P28360 Metazoa_SRP.175-201ENST00000619837 250 ntBASIC8.23□□□□□ -1.09
MSX1P28360 AC011389.3-201ENST00000623273 999 ntBASIC8.23□□□□□ -1.09
MSX1P28360 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 LINC01002-228ENST00000633402 565 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 AC005840.3-201ENST00000541888 1803 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 CTNNA2-203ENST00000402739 3684 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 ZNF833P-201ENST00000424938 1494 ntBASIC8.23□□□□□ -1.09
MSX1P28360 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 LAMA3-207ENST00000587184 5007 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 MCTP1-202ENST00000429576 3159 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 ZNF347-207ENST00000601469 2812 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 CEP85-209ENST00000640292 2286 ntAPPRIS ALT1 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 IFT122-201ENST00000296266 4151 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms