Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDX2Q99626 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.28■■□□□ 1
CDX2Q99626 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CDX2Q99626 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CDX2Q99626 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CDX2Q99626 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDX2Q99626 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CDX2Q99626 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.27■■□□□ 1
CDX2Q99626 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.27■■□□□ 1
CDX2Q99626 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDX2Q99626 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.27■■□□□ 1
CDX2Q99626 AL359075.1-203ENST00000462729 1002 ntBASIC21.27■■□□□ 1
CDX2Q99626 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.27■■□□□ 1
CDX2Q99626 AC141257.4-201ENST00000634557 245 ntBASIC21.27■■□□□ 1
CDX2Q99626 AC136944.6-201ENST00000634818 245 ntBASIC21.27■■□□□ 1
CDX2Q99626 AC116562.4-202ENST00000641738 218 ntBASIC21.27■■□□□ 1
CDX2Q99626 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
CDX2Q99626 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CDX2Q99626 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.27■■□□□ 1
CDX2Q99626 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CDX2Q99626 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
CDX2Q99626 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.26■□□□□ 0.99
CDX2Q99626 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.26■□□□□ 0.99
CDX2Q99626 KRT8P10-201ENST00000450021 1447 ntBASIC21.26■□□□□ 0.99
CDX2Q99626 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDX2Q99626 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CDX2Q99626 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CDX2Q99626 AC010542.4-201ENST00000563151 1910 ntBASIC21.25■□□□□ 0.99
CDX2Q99626 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX2Q99626 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.25■□□□□ 0.99
CDX2Q99626 AL845331.1-201ENST00000424978 1190 ntBASIC21.25■□□□□ 0.99
CDX2Q99626 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX2Q99626 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
CDX2Q99626 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.25■□□□□ 0.99
CDX2Q99626 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CDX2Q99626 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDX2Q99626 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDX2Q99626 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CDX2Q99626 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.24■□□□□ 0.99
CDX2Q99626 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CDX2Q99626 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CDX2Q99626 AL445675.2-201ENST00000620291 557 ntBASIC21.24■□□□□ 0.99
CDX2Q99626 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDX2Q99626 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CDX2Q99626 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.23■□□□□ 0.99
CDX2Q99626 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.23■□□□□ 0.99
CDX2Q99626 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 AL031432.5-201ENST00000641059 760 ntBASIC21.23■□□□□ 0.99
CDX2Q99626 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.23■□□□□ 0.99
CDX2Q99626 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDX2Q99626 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDX2Q99626 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms