Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB4Q8WW32 MIR2861-201ENST00000636310 90 ntBASIC20.25■□□□□ 0.83
HMGB4Q8WW32 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.25■□□□□ 0.83
HMGB4Q8WW32 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB4Q8WW32 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
HMGB4Q8WW32 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGB4Q8WW32 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 CD177P1-201ENST00000606252 935 ntBASIC20.24■□□□□ 0.83
HMGB4Q8WW32 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGB4Q8WW32 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 Z98882.1-201ENST00000622160 2253 ntBASIC20.23■□□□□ 0.83
HMGB4Q8WW32 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB4Q8WW32 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 FAM197Y1-201ENST00000421178 764 ntBASIC20.22■□□□□ 0.83
HMGB4Q8WW32 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 AL121906.2-201ENST00000621597 723 ntBASIC20.22■□□□□ 0.83
HMGB4Q8WW32 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 FBXW4P1-201ENST00000426721 2239 ntBASIC20.22■□□□□ 0.83
HMGB4Q8WW32 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB4Q8WW32 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 AL353807.1-201ENST00000427475 662 ntBASIC20.21■□□□□ 0.83
HMGB4Q8WW32 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 AC097493.4-201ENST00000641197 219 ntBASIC20.21■□□□□ 0.83
HMGB4Q8WW32 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB4Q8WW32 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
HMGB4Q8WW32 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB4Q8WW32 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms