Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH4P55283 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH4P55283 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 AC073314.1-201ENST00000568729 2216 ntBASIC20.59■□□□□ 0.89
CDH4P55283 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH4P55283 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDH4P55283 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CDH4P55283 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDH4P55283 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.59■□□□□ 0.89
CDH4P55283 AC006058.3-201ENST00000606217 1069 ntBASIC20.59■□□□□ 0.89
CDH4P55283 AC120498.8-201ENST00000614275 531 ntBASIC20.59■□□□□ 0.89
CDH4P55283 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.59■□□□□ 0.89
CDH4P55283 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
CDH4P55283 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.59■□□□□ 0.89
CDH4P55283 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH4P55283 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH4P55283 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH4P55283 FEM1AP1-201ENST00000431297 1995 ntBASIC20.59■□□□□ 0.89
CDH4P55283 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.58■□□□□ 0.89
CDH4P55283 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH4P55283 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH4P55283 AP005212.1-201ENST00000581547 1997 ntBASIC20.58■□□□□ 0.89
CDH4P55283 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH4P55283 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH4P55283 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH4P55283 KRT17P3-201ENST00000420566 1262 ntBASIC20.58■□□□□ 0.89
CDH4P55283 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.58■□□□□ 0.89
CDH4P55283 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.58■□□□□ 0.89
CDH4P55283 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDH4P55283 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CDH4P55283 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH4P55283 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.58■□□□□ 0.88
CDH4P55283 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.58■□□□□ 0.88
CDH4P55283 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CDH4P55283 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH4P55283 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDH4P55283 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH4P55283 POM121L13P-201ENST00000422362 380 ntBASIC20.57■□□□□ 0.88
CDH4P55283 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH4P55283 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH4P55283 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH4P55283 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH4P55283 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.57■□□□□ 0.88
CDH4P55283 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.57■□□□□ 0.88
CDH4P55283 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.57■□□□□ 0.88
CDH4P55283 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.57■□□□□ 0.88
CDH4P55283 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH4P55283 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CDH4P55283 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CDH4P55283 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CDH4P55283 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CDH4P55283 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 KRT18P29-201ENST00000397031 1267 ntBASIC20.56■□□□□ 0.88
CDH4P55283 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.56■□□□□ 0.88
CDH4P55283 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.56■□□□□ 0.88
CDH4P55283 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 AC128676.1-201ENST00000454392 318 ntBASIC20.56■□□□□ 0.88
CDH4P55283 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH4P55283 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.56■□□□□ 0.88
CDH4P55283 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH4P55283 TMEM191A-211ENST00000637163 1067 ntBASIC20.56■□□□□ 0.88
CDH4P55283 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 SMG8-203ENST00000578922 2178 ntBASIC20.56■□□□□ 0.88
CDH4P55283 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CDH4P55283 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH4P55283 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.55■□□□□ 0.88
CDH4P55283 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 GABARAPL3-202ENST00000624044 1851 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms