Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX3P41225 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX3P41225 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX3P41225 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX3P41225 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SOX3P41225 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SOX3P41225 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX3P41225 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX3P41225 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX3P41225 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
SOX3P41225 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SOX3P41225 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 AC011484.1-201ENST00000377652 1995 ntBASIC18.88■□□□□ 0.61
SOX3P41225 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.88■□□□□ 0.61
SOX3P41225 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SOX3P41225 AC097658.1-201ENST00000475555 843 ntBASIC18.88■□□□□ 0.61
SOX3P41225 AC083880.1-201ENST00000608266 535 ntBASIC18.88■□□□□ 0.61
SOX3P41225 MYC-209ENST00000641252 345 ntBASIC18.88■□□□□ 0.61
SOX3P41225 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.88■□□□□ 0.61
SOX3P41225 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX3P41225 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.88■□□□□ 0.61
SOX3P41225 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX3P41225 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX3P41225 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX3P41225 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX3P41225 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX3P41225 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX3P41225 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
SOX3P41225 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SOX3P41225 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SOX3P41225 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SOX3P41225 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SOX3P41225 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SOX3P41225 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SOX3P41225 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX3P41225 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.87■□□□□ 0.61
SOX3P41225 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX3P41225 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.87■□□□□ 0.61
SOX3P41225 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX3P41225 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX3P41225 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.87■□□□□ 0.61
SOX3P41225 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SOX3P41225 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX3P41225 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.86■□□□□ 0.61
SOX3P41225 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.86■□□□□ 0.61
SOX3P41225 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SOX3P41225 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.86■□□□□ 0.61
SOX3P41225 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.86■□□□□ 0.61
SOX3P41225 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX3P41225 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SOX3P41225 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SOX3P41225 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX3P41225 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX3P41225 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms