Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.45■□□□□ 0.86
HLA-DQB2P05538 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 AC091874.3-201ENST00000512672 1195 ntBASIC20.45■□□□□ 0.86
HLA-DQB2P05538 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQB2P05538 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 MIR4758-201ENST00000577688 71 ntBASIC20.44■□□□□ 0.86
HLA-DQB2P05538 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DQB2P05538 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.43■□□□□ 0.86
HLA-DQB2P05538 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 ID1-201ENST00000376105 1233 ntBASIC20.42■□□□□ 0.86
HLA-DQB2P05538 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 AC142086.2-201ENST00000569753 217 ntBASIC20.42■□□□□ 0.86
HLA-DQB2P05538 MYC-209ENST00000641252 345 ntBASIC20.42■□□□□ 0.86
HLA-DQB2P05538 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 BX119927.1-201ENST00000636596 1552 ntBASIC20.42■□□□□ 0.86
HLA-DQB2P05538 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.42■□□□□ 0.86
HLA-DQB2P05538 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 AL355802.2-201ENST00000402069 882 ntBASIC20.41■□□□□ 0.86
HLA-DQB2P05538 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 PCDHAC2-203ENST00000615316 3011 ntBASIC20.41■□□□□ 0.86
HLA-DQB2P05538 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQB2P05538 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DQB2P05538 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HLA-DQB2P05538 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms