Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CPSF4O95639 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.12■□□□□ 0.65
CPSF4O95639 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
CPSF4O95639 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CPSF4O95639 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.12■□□□□ 0.65
CPSF4O95639 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
CPSF4O95639 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.12■□□□□ 0.65
CPSF4O95639 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CPSF4O95639 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.12■□□□□ 0.65
CPSF4O95639 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.12■□□□□ 0.65
CPSF4O95639 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4O95639 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.12■□□□□ 0.65
CPSF4O95639 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CPSF4O95639 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CPSF4O95639 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.11■□□□□ 0.65
CPSF4O95639 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.11■□□□□ 0.65
CPSF4O95639 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
CPSF4O95639 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.11■□□□□ 0.65
CPSF4O95639 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4O95639 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CPSF4O95639 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
CPSF4O95639 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.1■□□□□ 0.65
CPSF4O95639 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.1■□□□□ 0.65
CPSF4O95639 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CPSF4O95639 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.1■□□□□ 0.65
CPSF4O95639 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 NTF6G-201ENST00000591094 616 ntBASIC19.1■□□□□ 0.65
CPSF4O95639 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.1■□□□□ 0.65
CPSF4O95639 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CPSF4O95639 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.1■□□□□ 0.65
CPSF4O95639 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.1■□□□□ 0.65
CPSF4O95639 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.1■□□□□ 0.65
CPSF4O95639 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.1■□□□□ 0.65
CPSF4O95639 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4O95639 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.09■□□□□ 0.65
CPSF4O95639 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CPSF4O95639 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4O95639 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.09■□□□□ 0.65
CPSF4O95639 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.09■□□□□ 0.65
CPSF4O95639 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4O95639 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CPSF4O95639 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CPSF4O95639 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.09■□□□□ 0.65
CPSF4O95639 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CPSF4O95639 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms