Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HMGN4O00479 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGN4O00479 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGN4O00479 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
HMGN4O00479 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.74■□□□□ 0.59
HMGN4O00479 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
HMGN4O00479 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
HMGN4O00479 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGN4O00479 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGN4O00479 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGN4O00479 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
HMGN4O00479 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGN4O00479 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGN4O00479 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.73■□□□□ 0.59
HMGN4O00479 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HMGN4O00479 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGN4O00479 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HMGN4O00479 AL162430.1-201ENST00000480705 870 ntBASIC18.73■□□□□ 0.59
HMGN4O00479 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.73■□□□□ 0.59
HMGN4O00479 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.73■□□□□ 0.59
HMGN4O00479 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGN4O00479 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGN4O00479 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGN4O00479 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGN4O00479 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HMGN4O00479 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGN4O00479 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 PTBP1P-201ENST00000554374 1601 ntBASIC18.72■□□□□ 0.59
HMGN4O00479 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HMGN4O00479 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGN4O00479 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGN4O00479 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGN4O00479 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGN4O00479 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGN4O00479 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGN4O00479 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGN4O00479 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HMGN4O00479 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGN4O00479 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGN4O00479 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HMGN4O00479 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGN4O00479 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGN4O00479 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGN4O00479 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.71■□□□□ 0.59
HMGN4O00479 CYP2T1P-201ENST00000432607 1285 ntBASIC18.71■□□□□ 0.59
HMGN4O00479 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.71■□□□□ 0.59
HMGN4O00479 BID-214ENST00000617586 542 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGN4O00479 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.71■□□□□ 0.59
HMGN4O00479 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGN4O00479 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGN4O00479 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGN4O00479 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HMGN4O00479 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGN4O00479 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGN4O00479 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGN4O00479 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGN4O00479 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGN4O00479 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGN4O00479 MIR5787-201ENST00000611784 55 ntBASIC18.7■□□□□ 0.58
HMGN4O00479 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 TMEM179-206ENST00000616017 1645 ntBASIC18.7■□□□□ 0.58
HMGN4O00479 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
HMGN4O00479 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGN4O00479 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms