Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
CBX4O00257 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CBX4O00257 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CBX4O00257 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 AL390719.1-204ENST00000412397 1219 ntBASIC20.56■□□□□ 0.88
CBX4O00257 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.56■□□□□ 0.88
CBX4O00257 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.56■□□□□ 0.88
CBX4O00257 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.56■□□□□ 0.88
CBX4O00257 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.56■□□□□ 0.88
CBX4O00257 AP003097.1-201ENST00000530657 1135 ntBASIC20.56■□□□□ 0.88
CBX4O00257 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.56■□□□□ 0.88
CBX4O00257 SOX15-203ENST00000570788 1093 ntBASIC20.56■□□□□ 0.88
CBX4O00257 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 DPP3P2-201ENST00000416030 1696 ntBASIC20.56■□□□□ 0.88
CBX4O00257 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.56■□□□□ 0.88
CBX4O00257 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CBX4O00257 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CBX4O00257 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CBX4O00257 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
CBX4O00257 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.55■□□□□ 0.88
CBX4O00257 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CBX4O00257 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.55■□□□□ 0.88
CBX4O00257 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.55■□□□□ 0.88
CBX4O00257 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.55■□□□□ 0.88
CBX4O00257 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.55■□□□□ 0.88
CBX4O00257 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
CBX4O00257 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CBX4O00257 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CBX4O00257 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.54■□□□□ 0.88
CBX4O00257 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.54■□□□□ 0.88
CBX4O00257 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CBX4O00257 AC026366.1-201ENST00000488803 879 ntBASIC20.54■□□□□ 0.88
CBX4O00257 UNC93B4-201ENST00000505679 747 ntBASIC20.54■□□□□ 0.88
CBX4O00257 AC005829.2-201ENST00000571422 1056 ntBASIC20.54■□□□□ 0.88
CBX4O00257 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.54■□□□□ 0.88
CBX4O00257 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 AC006557.6-201ENST00000623071 864 ntBASIC20.54■□□□□ 0.88
CBX4O00257 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.54■□□□□ 0.88
CBX4O00257 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.54■□□□□ 0.88
CBX4O00257 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.54■□□□□ 0.88
CBX4O00257 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CBX4O00257 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.54■□□□□ 0.88
CBX4O00257 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CBX4O00257 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CBX4O00257 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CBX4O00257 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CBX4O00257 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.53■□□□□ 0.88
CBX4O00257 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CBX4O00257 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.53■□□□□ 0.88
CBX4O00257 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.53■□□□□ 0.88
CBX4O00257 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.53■□□□□ 0.88
CBX4O00257 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.53■□□□□ 0.88
CBX4O00257 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.53■□□□□ 0.88
CBX4O00257 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CBX4O00257 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CBX4O00257 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CBX4O00257 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.52■□□□□ 0.88
CBX4O00257 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CBX4O00257 AC073314.1-201ENST00000568729 2216 ntBASIC20.52■□□□□ 0.88
CBX4O00257 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CBX4O00257 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.52■□□□□ 0.88
CBX4O00257 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms