Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 HLA-G-202ENST00000376815 851 ntBASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 HLA-G-203ENST00000376818 1127 ntBASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 DPP3P2-201ENST00000416030 1696 ntBASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMIM28A0A1B0GU29 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMIM28A0A1B0GU29 KRT8P20-201ENST00000423953 1409 ntBASIC21.64■■□□□ 1.06
SMIM28A0A1B0GU29 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 AC092720.2-201ENST00000602388 1665 ntBASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 AL031963.3-201ENST00000606441 850 ntBASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.64■■□□□ 1.05
SMIM28A0A1B0GU29 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 KRT8P17-201ENST00000453110 1448 ntBASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 AC133681.1-201ENST00000465482 601 ntBASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 AC124016.1-201ENST00000609552 612 ntBASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMIM28A0A1B0GU29 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMIM28A0A1B0GU29 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 RPS2P4-201ENST00000476944 856 ntBASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 AC008550.1-201ENST00000511500 884 ntBASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms