Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 C1QL1P1-201ENST00000568105 661 ntBASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SHANK3Q9BYB0 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC26.35■■□□□ 1.81
SHANK3Q9BYB0 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 SLC25A3P1-201ENST00000443844 931 ntBASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 AC010947.1-201ENST00000623454 693 ntBASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 AL049597.2-201ENST00000565575 961 ntBASIC26.34■■□□□ 1.81
SHANK3Q9BYB0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 AC073508.3-201ENST00000619697 1419 ntBASIC26.33■■□□□ 1.81
SHANK3Q9BYB0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
SHANK3Q9BYB0 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
SHANK3Q9BYB0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC26.31■■□□□ 1.8
SHANK3Q9BYB0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC26.3■■□□□ 1.8
SHANK3Q9BYB0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 MIR1238-201ENST00000408483 83 ntBASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC26.29■■□□□ 1.8
SHANK3Q9BYB0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms