Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RTF1Q92541 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
RTF1Q92541 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
RTF1Q92541 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC26.38■■□□□ 1.81
RTF1Q92541 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC26.37■■□□□ 1.81
RTF1Q92541 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
RTF1Q92541 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC26.37■■□□□ 1.81
RTF1Q92541 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
RTF1Q92541 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.37■■□□□ 1.81
RTF1Q92541 HES2-206ENST00000489730 730 ntTSL 2 BASIC26.37■■□□□ 1.81
RTF1Q92541 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
RTF1Q92541 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
RTF1Q92541 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.37■■□□□ 1.81
RTF1Q92541 RHOD-202ENST00000532559 538 ntTSL 3 BASIC26.37■■□□□ 1.81
RTF1Q92541 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
RTF1Q92541 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
RTF1Q92541 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
RTF1Q92541 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC26.37■■□□□ 1.81
RTF1Q92541 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
RTF1Q92541 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
RTF1Q92541 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.36■■□□□ 1.81
RTF1Q92541 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC26.36■■□□□ 1.81
RTF1Q92541 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC26.36■■□□□ 1.81
RTF1Q92541 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC26.36■■□□□ 1.81
RTF1Q92541 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC26.36■■□□□ 1.81
RTF1Q92541 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC26.36■■□□□ 1.81
RTF1Q92541 MTDHP1-201ENST00000605323 784 ntBASIC26.36■■□□□ 1.81
RTF1Q92541 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC26.36■■□□□ 1.81
RTF1Q92541 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC26.36■■□□□ 1.81
RTF1Q92541 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC26.36■■□□□ 1.81
RTF1Q92541 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC26.36■■□□□ 1.81
RTF1Q92541 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
RTF1Q92541 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RTF1Q92541 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
RTF1Q92541 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RTF1Q92541 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RTF1Q92541 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
RTF1Q92541 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
RTF1Q92541 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC26.35■■□□□ 1.81
RTF1Q92541 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.35■■□□□ 1.81
RTF1Q92541 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC26.35■■□□□ 1.81
RTF1Q92541 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
RTF1Q92541 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.34■■□□□ 1.81
RTF1Q92541 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RTF1Q92541 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RTF1Q92541 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
RTF1Q92541 USP36-216ENST00000589424 970 ntTSL 5 BASIC26.34■■□□□ 1.81
RTF1Q92541 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RTF1Q92541 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC26.34■■□□□ 1.81
RTF1Q92541 AC007225.1-201ENST00000566331 1836 ntBASIC26.34■■□□□ 1.81
RTF1Q92541 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
RTF1Q92541 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
RTF1Q92541 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RTF1Q92541 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC26.33■■□□□ 1.81
RTF1Q92541 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
RTF1Q92541 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
RTF1Q92541 ISG20-202ENST00000379224 540 ntTSL 3 BASIC26.33■■□□□ 1.81
RTF1Q92541 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
RTF1Q92541 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC26.33■■□□□ 1.81
RTF1Q92541 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
RTF1Q92541 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC26.33■■□□□ 1.81
RTF1Q92541 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC26.33■■□□□ 1.81
RTF1Q92541 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC26.33■■□□□ 1.81
RTF1Q92541 AL023875.1-201ENST00000640777 796 ntBASIC26.33■■□□□ 1.81
RTF1Q92541 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RTF1Q92541 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.33■■□□□ 1.81
RTF1Q92541 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
RTF1Q92541 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
RTF1Q92541 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC26.32■■□□□ 1.8
RTF1Q92541 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
RTF1Q92541 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RTF1Q92541 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC26.32■■□□□ 1.8
RTF1Q92541 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.32■■□□□ 1.8
RTF1Q92541 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.32■■□□□ 1.8
RTF1Q92541 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RTF1Q92541 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC26.32■■□□□ 1.8
RTF1Q92541 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RTF1Q92541 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC26.32■■□□□ 1.8
RTF1Q92541 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC26.31■■□□□ 1.8
RTF1Q92541 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
RTF1Q92541 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC26.31■■□□□ 1.8
RTF1Q92541 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 HLA-G-202ENST00000376815 851 ntBASIC26.31■■□□□ 1.8
RTF1Q92541 HLA-G-203ENST00000376818 1127 ntBASIC26.31■■□□□ 1.8
RTF1Q92541 RPS2P4-201ENST00000476944 856 ntBASIC26.31■■□□□ 1.8
RTF1Q92541 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.31■■□□□ 1.8
RTF1Q92541 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.31■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms