Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL4A3Q01955 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL4A3Q01955 HTR7P1-201ENST00000538670 1336 ntBASIC20.7■□□□□ 0.9
COL4A3Q01955 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A3Q01955 AL024507.2-201ENST00000606070 2574 ntBASIC20.7■□□□□ 0.9
COL4A3Q01955 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A3Q01955 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A3Q01955 KRT8P36-201ENST00000489121 1440 ntBASIC20.7■□□□□ 0.9
COL4A3Q01955 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A3Q01955 RBM17P1-201ENST00000453646 1190 ntBASIC20.7■□□□□ 0.9
COL4A3Q01955 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL4A3Q01955 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A3Q01955 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A3Q01955 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3Q01955 AC011484.1-201ENST00000377652 1995 ntBASIC20.69■□□□□ 0.9
COL4A3Q01955 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3Q01955 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3Q01955 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.69■□□□□ 0.9
COL4A3Q01955 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A3Q01955 AC005521.1-201ENST00000393351 872 ntBASIC20.69■□□□□ 0.9
COL4A3Q01955 AL390719.1-204ENST00000412397 1219 ntBASIC20.69■□□□□ 0.9
COL4A3Q01955 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL4A3Q01955 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A3Q01955 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A3Q01955 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3Q01955 AP000525.1-201ENST00000608286 694 ntBASIC20.69■□□□□ 0.9
COL4A3Q01955 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A3Q01955 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3Q01955 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A3Q01955 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COL4A3Q01955 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3Q01955 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3Q01955 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A3Q01955 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3Q01955 MMP23A-201ENST00000234610 1017 ntBASIC20.68■□□□□ 0.9
COL4A3Q01955 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3Q01955 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A3Q01955 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.68■□□□□ 0.9
COL4A3Q01955 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.68■□□□□ 0.9
COL4A3Q01955 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3Q01955 AL049597.2-201ENST00000565575 961 ntBASIC20.68■□□□□ 0.9
COL4A3Q01955 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3Q01955 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A3Q01955 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A3Q01955 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A3Q01955 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL4A3Q01955 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A3Q01955 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A3Q01955 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A3Q01955 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3Q01955 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A3Q01955 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL4A3Q01955 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3Q01955 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
COL4A3Q01955 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A3Q01955 AC027702.1-201ENST00000563810 1770 ntBASIC20.67■□□□□ 0.9
COL4A3Q01955 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.67■□□□□ 0.9
COL4A3Q01955 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A3Q01955 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A3Q01955 AL121906.2-201ENST00000621597 723 ntBASIC20.67■□□□□ 0.9
COL4A3Q01955 AC092865.7-201ENST00000641832 219 ntBASIC20.67■□□□□ 0.9
COL4A3Q01955 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A3Q01955 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A3Q01955 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A3Q01955 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A3Q01955 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL4A3Q01955 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A3Q01955 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A3Q01955 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A3Q01955 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A3Q01955 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A3Q01955 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A3Q01955 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A3Q01955 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A3Q01955 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A3Q01955 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 AC145285.6-201ENST00000604632 637 ntBASIC20.65■□□□□ 0.9
COL4A3Q01955 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A3Q01955 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL4A3Q01955 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A3Q01955 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A3Q01955 CYP2D8P-201ENST00000433633 1490 ntBASIC20.65■□□□□ 0.9
COL4A3Q01955 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms